1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaacattttattaattaagcgcgcaatagtagcacgtggttttgcttcttgcttttgcataccagcatactacgcaaaagctcgtcatgtatatataaaagtttttgcttgtttgtggtttgattagcttcagcagtttcatcagccagctgtttactatgcatcatcttatctgtgaaatttccctagGCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGACAGCAAGGAGATTGCCAGGGCTCAG
species | Zea mays |
transcript | GRMZM2G073571_T03 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTGTGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAG GCTTTGCACGAGGCTCTTATCAGGCAAEST: gi|166704541|gb|EG067751.1|EG067751
genomic: CTGTGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAGgtaacatttt ... atttccctagGCTTTGCACGAGGCTCTTATCAGGCAA
EST: TGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAG GCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGEST: gi|15427246|gb|BI543068.1|BI543068
genomic: TGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAGgtaacatttt ... atttccctagGCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCG
EST: CTGTGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAG GCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATGGACEST: gi|166549613|gb|EG205430.1|EG205430
genomic: CTGTGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAGgtaacatttt ... atttccctagGCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGAC
EST: TGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAG GCTTTGCACGAGGCTCTTATCAGGACAAGAGGAACTGCTCGCGAACATCG
genomic: TGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAGgtaacatttt ... atttccctagGCTTTGCACGAGGCTCTTATCAGG-CAAGAGGAACTGCTCGCGAACATCG
agtttcatcagccagctgtttactatgcatcatcttatctgtgaaatttccctagGCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGACAGCAAGGAGATTGCCAGGGCTCAG
tttccct CT-rich tract
tttactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacattttattaattaagcgcgcaatagtagcacgtggttttgcttcttgcttttgcataccagcatactacgcaaaagctcgtcatgtatatataaaagtttttgcttgtttgtggtttgattagcttcagcagtttcatcagccagctgtttactatgcatcatcttatctgtgaaatttccctagGCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGACAGCAAGGAGATTGCCAGGGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT