Sequence
atgc intronic sequence ATGC exonic sequencegtaagtattgtcgtgttactttattggttttgcttgttaacagattgctgaaaaatttgatatctttatactattagATGGTATGGTCAAGGGTCAAAACCCATGGGCATCATCCATCACCTCGAGCAGGTTGCTGCGGAGCTCTTTGTGGAACTAAATGGTATATTGCAGGAGGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G070553_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os11g43590.4 (Oryza sativa), 3'ss of exon 10
gtaagtattgtcgtgttactttattggttttgcttgttaaca-gattgctgaaaaatttgatatctttatactattagATGGTATGGTCAAGGGTCAAAACCCATGGGCATCATCCATCACCTCGAGCAGGTTGCTGCGGAGCTCTTTGTGGAACTAAATGGTATATTGCAGGAGGTG
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gtaatttctatcgggtttccttgtaggtttttcttgttgatgcgcttactgaaaaaaccattcttcttgt-----tagATGGTATGGTCGAGAGTGAAAACCCATGGCCATCATCCATCACCTCGAGCTGGTTGCTGCGGAGCTCTCTGTGGCACTAAATGGTATATCGCAGGGGGTG
upper sequence: GRMZM2G070553_T01 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA13G28760.1 (Glycine max), 3'ss of exon 8
-------------------gtaagtattgtcgtgttactttattggttttgcttgttaacagattgc-tgaaaaatttgatatctttatactattagATGGTATGGTCAAGGGTCAAAACCCATGGGCATCATCCATCACCTCGAGCAGGTTGCTGCGGAGCTCTTTGTGGAACTAAATGGTATATTGCAGGAGGTG
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gtgagctctctatatcagtgaaacttttttatttctccaaaatgaagattaaatgctcattcattgtgtaatttaatgaaagtatattttctttcagATGGCATGGTCAAGAATAAAAATACGTGGTTTCCATCCATCACCAAGAGCTGGTTGCTGTGGTGTTTTATGTGGCACTAAATGGTATATTACAGGAGGTG
upper sequence: GRMZM2G070553_T01 (Zea mays), 3'ss of exon 10
lower sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 10
------------------------gtaagtattgtcgtgttactttattggttt-----tgcttgttaacagattgctgaa--aaatttgatatct---ttatactattagATGGTATGGTCAAGGGTCAAAACCCATGGGCATCATCCATCACCTCGAGCAGGTTGCTGCGGAGCTCTTTGTGGAACTAAATGGTATATTGCAGGAGGTG
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gtttgtagagcaaccattcttctggagtttattgtcaaacaactttatttctataatgatgaaaacttacatcttcattagttgattttgatatgtggatttttgtctcagATGATATGGTCAAGAATTAAGAAGAAACGAGGATTTCCATCACCTAGAGCTGGTTGTTGTGGAGTTTTATGTGGAACTAAATGGTATATAGCAGGGGGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26558216|gb|CA830451.1|CA830451EST: GCTCTAGATTTCGAAACA ATGGTATGGTCAAGGGTCAAAACCCATGGGCATCATCCATCACCTCGAGCA
genomic: GCTCTAGATTTTGAAACAgtaagtattg ... atactattagATGGTATGGTCAAGGGTCAAAACCCATGGGCATCATCCATCACCTCGAGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attggttttgcttgttaacagattgctgaaaaatttgatatctttatactattagATGGTATGGTCAAGGGTCAAAACCCATGGGCATCATCCATCACCTCGAGCAGGTTGCTGCGGAGCTCTTTGTGGAACTAAATGGTATATTGCAGGAGGTG
tctttat CT-rich tract
tgaaaaatttgatatc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtattgtcgtgttactttattggttttgcttgttaacagattgctgaaaaatttgatatctttatactattagATGGTATGGTCAAGGGTCAAAACCCATGGGCATCATCCATCACCTCGAGCAGGTTGCTGCGGAGCTCTTTGTGGAACTAAATGGTATATTGCAGGAGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT