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gttggtggttgatacttatgcttacactttttgactgaccattttgattctgtgaagctaactgtgtggttttctattttttaaacttactggagCAGCAAGCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAG
species | Zea mays |
transcript | GRMZM2G070113_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATTTCACAAATCCATCATTACCTACAGAACAACGTCCTAGGGCCTCT--- CAGCAAGCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAEST: gi|31628085|gb|CD526434.1|CD526434
genomic: ATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAGgttggtggtt ... cttactggagCAGCAAGCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGA
EST: ATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAG CA--A-GCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAEST: gi|211376275|gb|FL144037.1|FL144037
genomic: ATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAGgttggtggtt ... cttactggagCAGCAAGCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGA
EST: CCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAG CAGCAAGCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAEST: gi|30031872|gb|CB833723.1|CB833723
genomic: CCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAGgttggtggtt ... cttactggagCAGCAAGCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGA
EST: ATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCT--- CAGCAAGCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAEST: gi|61118021|gb|DN558982.1|DN558982
genomic: ATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAGgttggtggtt ... cttactggagCAGCAAGCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGA
EST: ATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAG CA--A-GCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAEST: gi|211376276|gb|FL144038.1|FL144038
genomic: ATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAGgttggtggtt ... cttactggagCAGCAAGCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGA
EST: CCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAG CAGCAAGCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAEST: gi|33093651|gb|CF053645.1|CF053645
genomic: CCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAGgttggtggtt ... cttactggagCAGCAAGCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGA
EST: ATTTCACAAATCCATCATTACCTACAGAACAACGTCCTAGGGCCTCT--- CAGCAAGCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAEST: gi|71436418|gb|DR817468.1|DR817468
genomic: ATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAGgttggtggtt ... cttactggagCAGCAAGCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGA
EST: ATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAG CA--A-GCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAEST: gi|76011812|gb|DT938982.1|DT938982
genomic: ATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAGgttggtggtt ... cttactggagCAGCAAGCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGA
EST: ATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAG CA--A-GCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAEST: gi|32915229|gb|CF020041.1|CF020041
genomic: ATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAGgttggtggtt ... cttactggagCAGCAAGCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGA
EST: ATTTCACAAATCCATCATTACCTACAGAACAACGTCCTAGGGCCTCT--- CAGCAAGCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGA
genomic: ATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAGgttggtggtt ... cttactggagCAGCAAGCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGA
attttgattctgtgaagctaactgtgtggttttctattttttaaacttactggagCAGCAAGCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAG
aacttac putative branch site (score: 21)
ttttctattttttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtggttgatacttatgcttacactttttgactgaccattttgattctgtgaagctaactgtgtggttttctattttttaaacttactggagCAGCAAGCTTATCCTGATCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA