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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattcctgcatgctcaagcccgaaatacaagtaaggtactggagatttatgaaacagattaatagttccagggtttccaaactgtaaatacataaatgaaacaaaatttacattctgtttgcccatcatcagaatatgataatcttgatttgttcccttatccccaatctaaatctatcaaggtgcaatttatcagGTGCTGAATGTAATGTACCATTTTCTGCTTTAAAGAGTTACTCTGTTTTGGCCCTTTTGGCATAT

Basic information

species Zea mays
transcript GRMZM2G069916_T05
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069916_T05 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os03g62640.4 (Oryza sativa), 3'ss of exon 10
gtaaattcctgcatgctcaagcccgaaatacaagtaaggtactggagatttatgaaacagattaatagttccagggtttccaaactgtaaatacataaatgaaacaaaatttacattctgtttgcccatcat---cagaatatgataatcttgatttgttcccttatcc-ccaatctaaatctatcaaggtgcaa-tttatcagGTGCTGAATGTAATGTACCATTTTCTGCTTTAAAGAGTTACTCTGTTTTGGCCCTTTTGGCATAT-----------------------------------
                                                                                                      |    |  ||| ||||||||||  ||| ||   |  | ||||    | |||   | |  |   ||     ||  |  |  | |    || ||  ||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||||||||| |                                   
-----------------------------------------------------------------------------------------------------tatttgaccttatattctgtttgtacattatgatccaagtatgtgggttttgtgctttctctgaatttgttaaggtggaaatttt---gtacatctttatcagGTGCTGAATGTTATGTACCCTTTACTGCTTTAAAGAGTTACTCTGTTTTGGGCCTTTTGGCATCTGTGAGTTTTCTTATCTCAAGGAAGAACCTTCAGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttgatttgttcccttatccccaatctaaatctatcaaggtgcaatttatcagGTGCTGAATGTAATGTACCATTTTCTGCTTTAAAGAGTTACTCTGTTTTGGCCCTTTTGGCATAT
                         atctaaa  putative branch site (score: 3)
                        aatctaaat  TA-rich tract