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...attttgtcaggaacccaactatttgtaaagaacaatcatttccctcgaagaatgtccaagttcagactaatataatggtcgctgtacattttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTGGAGGTGGCGCTACAGAGCTGACTGTATCAGCAACACTGAAGCAAAAGA
species | Zea mays |
transcript | GRMZM2G069765_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGAGGGGAGCAAGCAGGGATGTATTGAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTEST: gi|33101243|gb|CF061203.1|CF061203
genomic: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAATCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTEST: gi|213187664|gb|FM193192.1|FM193192
genomic: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: GCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGNNNCATCTTGAAAAATCCATTACTCCTTCCEST: gi|211513336|gb|FL030352.1|FL030352
genomic: GCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGG-AACATTTTGAAAAATCCAAAACTCCTTCC
EST: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTEST: gi|32932914|gb|CF037726.1|CF037726
genomic: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: A-GGGAGCTAAGCTAAGGGTGTATTGAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCG-TGCAAAGGAACATTTTGAAGAATCCAAAACTCCTTCCEST: gi|13149865|gb|BG320187.1|BG320187
genomic: AGGGGAGC-AAGC-AAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGC-AAGGAACATTTTGAAAAATCCAAAACTCCTTCC
EST: TGA-GGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTEST: gi|33093954|gb|CF053948.1|CF053948
genomic: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: TGAGGGGAGCAAGCAAGGATGTATTGAAT-AAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTEST: gi|67025927|gb|CO454676.1|CO454676
genomic: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: TGAGGGGAACCAGCAAGGATGTATTGAATGAAGTTGAAAGAAAC-TGCAG GATGCCATGTCCGTTGCCAGGA-CATTTTGEST: gi|33093243|gb|CF053237.1|CF053237
genomic: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTG
EST: TGAGGGGAGCAAGCAAGGATGTA-TGAATG-AGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAANAATCCAAAACTCCTTCCTEST: gi|22545904|gb|BU098263.1|BU098263
genomic: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTEST: gi|32931972|gb|CF036784.1|CF036784
genomic: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTEST: gi|67040881|gb|CO467136.1|CO467136
genomic: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTEST: gi|166509795|gb|EG256589.1|EG256589
genomic: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: AAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTEST: gi|78083039|gb|DV511432.1|DV511432
genomic: AAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: CAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTEST: gi|22819616|gb|BU499706.1|BU499706
genomic: CAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTEST: gi|67013717|gb|CO442466.1|CO442466
genomic: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: GAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCCTGCAG -ATGCCATGTNCGTTGCAAGGA-CATTTTGAAAAEST: gi|211183836|gb|FL001293.1|FL001293
genomic: GAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACC-TGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAA
EST: GTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTEST: gi|32937379|gb|CF042198.1|CF042198
genomic: GTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTEST: gi|32934062|gb|CF038874.1|CF038874
genomic: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTEST: gi|211513337|gb|FL030353.1|FL030353
genomic: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTEST: gi|33093289|gb|CF053283.1|CF053283
genomic: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAANAATCCAAAACTCCTTCCTEST: gi|32933723|gb|CF038535.1|CF038535
genomic: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: TGAGGGGAGCAAGCAAGTATGTATTGAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTEST: gi|67013378|gb|CO442127.1|CO442127
genomic: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTEST: gi|32942856|gb|CF047675.1|CF047675
genomic: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: GAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTEST: gi|32944113|gb|CF048932.1|CF048932
genomic: GAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTEST: gi|32945086|gb|CF049905.1|CF049905
genomic: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: AGGGGAGCAAGCCAAGGATGTA-TGAAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTAAAAAATCCAAAACTCCTTCCTEST: gi|32934718|gb|CF039530.1|CF039530
genomic: AGGGGAGCAAG-CAAGGATGTATTG-AATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
EST: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAG GATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
genomic: TGAGGGGAGCAAGCAAGGATGTATTGAATGAAGTTGAGAGAAACCTGCAGgtatttcttc ... ttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCT
cgaagaatgtccaagttcagactaatataatggtcgctgtacattttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTGGAGGTGGCGCTACAGAGCTGACTGTATCAGCAACACTGAAGCAAAAGA
gactaat putative branch site (score: 258)
cattttc putative PPT
actaatataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttgtcaggaacccaactatttgtaaagaacaatcatttccctcgaagaatgtccaagttcagactaatataatggtcgctgtacattttcaatgcagGATGCCATGTCCGTTGCAAGGAACATTTTGAAAAATCCAAAACTCCTTCCTGGAGGTGGCGCTACAGAGCTGACTGTATCAGCAACACTGAAGCAAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - ccaacta
- - - - - - - - - - - - - -aagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgtac