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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgggtgtaatttgattcagaacttatgctttttttttgttttggtatggtaatattatatgtatatgtatgtttgagatttactttatcattttcttcagGAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACG

Basic information

species Zea mays
transcript GRMZM2G069758_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069758_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os12g40830.3 (Oryza sativa), 3'ss of exon 9
-----tgggtgtaatttgattcagaacttatgctttttttttgttttggtatggtaatattatatgtatatgtatgtttgagatttactttatcattttcttcagGAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACG
     |  |||||||| | | ||      ||| ||||   |||  |   |||  |  |   |  |   | |  || |  |  |||||  || || |  | ||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||
ttttatttgtgtaatt-ggtgcattgga-atgattttaagttgaatccatattattgttccagtttgttcttcatatg-gcaattta--ttgtcttgattttcagGAACAACCACCAGAACAATTTAAGATTGAGATACCCAAGATACCTGCATATTTCACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33097992|gb|CF057952.1|CF057952
EST:     CCCTTATTGAAGGTAAGCTGCTCCTTATCGGAAGTCACNNNNNNNCAGAG                         GAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATAT
genomic: CTCTTATTGAAGGTAAGCTGCTCCTTATCGGAAGTCACAAAAAAACAGAGgtaactttca ... ttttcttcagGAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATAT
EST: gi|86471052|gb|DY237422.1|DY237422
EST:     CTCTTATTGAAGGTAAGCTGCTCCTTATCGGAAGTCACNNNNNNNCAGAG                         GAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATAT
genomic: CTCTTATTGAAGGTAAGCTGCTCCTTATCGGAAGTCACAAAAAAACAGAGgtaactttca ... ttttcttcagGAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATAT
EST: gi|33096068|gb|CF056062.1|CF056062
EST:     CCCTTATTGAAGGTAAGCTGCTCCTTATCGGAAGTCACNNNNNNNCAGAG                         GAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATAT
genomic: CTCTTATTGAAGGTAAGCTGCTCCTTATCGGAAGTCACAAAAAAACAGAGgtaactttca ... ttttcttcagGAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATAT
EST: gi|17931888|gb|BM268848.1|BM268848
EST:     CTCTTATTGAAGGTAAGCTGCTCCTTATCGGAAGTCACNNNNNNNCAGAG                         GAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATAT
genomic: CTCTTATTGAAGGTAAGCTGCTCCTTATCGGAAGTCACAAAAAAACAGAGgtaactttca ... ttttcttcagGAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATAT
EST: gi|67022839|gb|CO451588.1|CO451588
EST:     CTCTTATTGAAGGTAAGCTGCTCCTTATCGGAAGTCACNNNNNNNCAGAG                         GAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATAT
genomic: CTCTTATTGAAGGTAAGCTGCTCCTTATCGGAAGTCACAAAAAAACAGAGgtaactttca ... ttttcttcagGAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATAT
EST: gi|40303606|gb|CK347993.1|CK347993
EST:     CTCTTATTGAAGGCAAGCTGCTCCTTATCGGAAGTCACNNNNNNNCAGAG                         GAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATAT
genomic: CTCTTATTGAAGGTAAGCTGCTCCTTATCGGAAGTCACAAAAAAACAGAGgtaactttca ... ttttcttcagGAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATAT
EST: gi|16922789|gb|BM075781.1|BM075781
EST:     CTCTTATTGAAGGTAAGCTGCTCCTTATCGGAAGTCACNNNNNNNCAGAG                         GAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATAT
genomic: CTCTTATTGAAGGTAAGCTGCTCCTTATCGGAAGTCACAAAAAAACAGAGgtaactttca ... ttttcttcagGAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggtaatattatatgtatatgtatgtttgagatttactttatcattttcttcagGAACAACAGCCAGAACAATTTAAGATTGAGATACCAAAGATACCTGCATATTTCACG
                                     ctttatcattttcttc  CT-rich tract
     aatattatatgtatat  TA-rich tract