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gtgaattttcttatcatctgaatgagaatgaaagagccgtatcaatatctgctgtaatctgatagcgtgggtaacatcttttgcagCTTTGTGATTTATACGAGAACGATTCAATTTTTGACAAATTTGAGTGCTGCCTCAGCGGCGATGGACTCCATGTTGCAACTGGTTCTTATAG
species | Zea mays |
transcript | GRMZM2G069631_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATTCAGGCCCAGTTGCAACTTTTCAGGTTCATGAATACTTACGTCCTAAG CTTTGTGATTTATACGAGAACGATTCAATTTTTGACAAATTTGAGTGCTGCEST: gi|71772341|gb|DR970277.1|DR970277
genomic: ATTCAGGCCCAGTTGCAACTTTTCAGGTTCATGAATACTTACGTCCTAAGgtgaattttc ... tcttttgcagCTTTGTGATTTATACGAGAACGATTCAATTTTTGACAAATTTGAGTGCTGC
EST: ATTCAGGCCCAGTTGCAACTTTTCAGGTTCATGAATACTTACGTCCTAAG CTTTGTGATTTATACGAGAACGATTCAATTTTTGACAAATTTGAGTGCTGC
genomic: ATTCAGGCCCAGTTGCAACTTTTCAGGTTCATGAATACTTACGTCCTAAGgtgaattttc ... tcttttgcagCTTTGTGATTTATACGAGAACGATTCAATTTTTGACAAATTTGAGTGCTGC
aagagccgtatcaatatctgctgtaatctgatagcgtgggtaacatcttttgcagCTTTGTGATTTATACGAGAACGATTCAATTTTTGACAAATTTGAGTGCTGCCTCAGCGGCGATGGACTCCATGTTGCAACTGGTTCTTATAG
gggtaac putative branch site (score: 112)
catctttt CT-rich tract
tatcaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaattttcttatcatctgaatgagaatgaaagagccgtatcaatatctgctgtaatctgatagcgtgggtaacatcttttgcagCTTTGTGATTTATACGAGAACGATTCAATTTTTGACAAATTTGAGTGCTGCCTCAGCGGCGATGGACTCCATGTTGCAACTGGTTCTTATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA