Sequence
atgc intronic sequence ATGC exonic sequence...gagcttctgcttcagttttgaaatgttttttgtgaagtctatatatacttttcggtaaatattcaaatctgacactgcattttctttactgttcttttagAATGTCCTTGGAAACTGGAGCTCAAAGTTGTTTGCAGTTGCTTTGTTGGCATCTGGTCAGAGTTCTACAATTACGGGGACATATGCTGGACAATATGTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G069198_T03 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os06g46310.3 (Oryza sativa), 3'ss of exon 9
gagcttctgcttcagttttg---aaatgttttttgtgaagtctatatatacttttcggtaaatattca-aatctgacactgcattttctttactgttcttttagAATGTCCTTGGAAACTGGAGCTCAAAGTTGTTTGCAGTTGCTTTGTTGGCATCTGGTCAGAGTTCTACAATTACGGGGACATATGCTGGACAATATGTCA
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---tttccatgtaaattgtgcagaaacaattctgaaattatctttgtcaatttctgtattgtaatttataatctgat-ccatattattttatatgttgttatagAATGTCCTCGGAAACTGGAGCTCAAAGTTATTTGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACAATTACAGGAACTTATGCGGGACAATATGTCA
upper sequence: GRMZM2G069198_T03 (Zea mays), 3'ss of exon 10
lower sequence: AT1G15960.1 (Arabidopsis thaliana), 3'ss of exon 9
gagcttctgcttcagttttgaaatgttttttgtgaagtctatatatacttttcggtaaatattcaaatctgacactgcattttctttactgttcttttagAATGTCCTTGGAAACTGGAGCTCAAAGTTGTTTGCAGTTGCTTTGTTGGCATCTGGTCAGAGTTCTACAATTACGGGGACATATGCTGGACAATATGTCA
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--gtaaatccatgaatcct-atatcttttgcttcaatttcttgcataacttctcacat-tattagaggatctatatatacttattctggttgtctcacagAACGTTGTGGGTAAATGGAGCTCAAAGCTATTTGCAATTGCGTTGCTTGCTTCCGGTCAGAGTTCAACCATAACCGGAACATATGCTGGACAATACGTTA
upper sequence: GRMZM2G069198_T03 (Zea mays), 3'ss of exon 10
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 3'ss of exon 10
------------------------------------------------------------------------gagcttctgcttcagt---tttgaaat---gttttttgtgaagtctatatatacttttcgg----taaatattcaaatctgacactgcattttc--tttactgttcttt-tagAATGTCCTTGGAAACTGGAGCTCAAAGTTGTTTGCAGTTGCTTTGTTGGCATCTGGTCAGAGTTCTACAATTACGGGGACATATGCTGGACAATATGTCA
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gtatgtctctgtagttgtagcaacatgggcatttattgttatcatccttcaatctctcatttagcttctaaccagattgtgctaaaatccatttcaaatcaggattcttggtatggttttgccttttcttctgaacccaactgtccagatttttcatgatattgttaatttgttatcatttgcagAATGTATTAGGCAAATGGAGCTCAAAGCTTTTTGCTATTGCTTTGCTAGCATCTGGTCAGAGTTCTACGATCACGGGAACATATGCAGGGCAATATGTAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacttttcggtaaatattcaaatctgacactgcattttctttactgttcttttagAATGTCCTTGGAAACTGGAGCTCAAAGTTGTTTGCAGTTGCTTTGTTGGCATCTGGTCAGAGTTCTACAATTACGGGGACATATGCTGGACAATATGTCA
atctgac putative branch site (score: 3)
cattttctttactgtt putative PPT
taaatattcaaatct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gagcttctgcttcagttttgaaatgttttttgtgaagtctatatatacttttcggtaaatattcaaatctgacactgcattttctttactgttcttttagAATGTCCTTGGAAACTGGAGCTCAAAGTTGTTTGCAGTTGCTTTGTTGGCATCTGGTCAGAGTTCTACAATTACGGGGACATATGCTGGACAATATGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA