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...aacaccccataaggatcatgtttttttaggacctgtgctatgtatatctcaggtttttcttgtactgaatattattgttaatttgcccaaccgttgtcagGTTGACCTGAAAGTTCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTAGACCAAGGAAAGAGGATTCTTAAG
species | Zea mays |
transcript | GRMZM2G064695_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTATGAAATGTGATGTGATAGCAAGTGGAATTGTTAATGCTGCCAAACAG GTTGACCTGAAAGTTCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTAGACEST: gi|5714240|gb|AI944225.1|AI944225
genomic: TTATGAAATGTGATGTGATAGCAAGTGGAATTGTTAATGCTGCCAAACAGgtacattttt ... ccgttgtcagGTTGACCTGAAAGTTCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTAGAC
EST: TTATGAAATGTGATGTGATAGCAAGTGGAATTGTTAATGCTGCCAAACAG GTTGACCTGAAAGTTCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTAGACEST: gi|32846416|gb|CD986097.1|CD986097
genomic: TTATGAAATGTGATGTGATAGCAAGTGGAATTGTTAATGCTGCCAAACAGgtacattttt ... ccgttgtcagGTTGACCTGAAAGTTCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTAGAC
EST: TTATGAAATGTGATGTGATAGCAAGTGGAATTGTTAATGCTGCCAAACAG GTTGACCTGAAAGTTCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTAGACEST: gi|148951068|gb|EC896727.2|EC896727
genomic: TTATGAAATGTGATGTGATAGCAAGTGGAATTGTTAATGCTGCCAAACAGgtacattttt ... ccgttgtcagGTTGACCTGAAAGTTCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTAGAC
EST: TTATGAAATGTGATGTGATAGCAAGTGGAATTGTTAATGCTGCCAAACAG GTTGACCTGAAAGTTCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTAGACEST: gi|60398611|gb|DN231427.1|DN231427
genomic: TTATGAAATGTGATGTGATAGCAAGTGGAATTGTTAATGCTGCCAAACAGgtacattttt ... ccgttgtcagGTTGACCTGAAAGTTCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTAGAC
EST: TTATGAAATGTGATGTGATAGCAAGTGGAATTGTTAATGCTGCCAAACAG GTTGACCTGAAAGTTCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTAGACEST: gi|32940144|gb|CF044963.1|CF044963
genomic: TTATGAAATGTGATGTGATAGCAAGTGGAATTGTTAATGCTGCCAAACAGgtacattttt ... ccgttgtcagGTTGACCTGAAAGTTCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTAGAC
EST: TTATGAAATGTGATGTGATAGCAAGTGGAATTGTTAATGCTGCCAAACAG GTTGACCTGAAAGTTCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTAGACEST: gi|211240437|gb|FL261944.1|FL261944
genomic: TTATGAAATGTGATGTGATAGCAAGTGGAATTGTTAATGCTGCCAAACAGgtacattttt ... ccgttgtcagGTTGACCTGAAAGTTCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTAGAC
EST: TTATGAAATGTGATGTGATAGCAAGTGGAATTGTTAATGCTGCCAAACAG GTTGACCTGAAAGTTCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTAGACEST: gi|113831703|gb|DW948357.1|DW948357
genomic: TTATGAAATGTGATGTGATAGCAAGTGGAATTGTTAATGCTGCCAAACAGgtacattttt ... ccgttgtcagGTTGACCTGAAAGTTCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTAGAC
EST: GAATTGTTAATGCTAGCCAAACAG GTTGACCTGAAAGTTCCTGTTAGTTGTTCGGTTGGAAGGCACCAATGTAGEST: gi|211240439|gb|FL261946.1|FL261946
genomic: GAATTGTTAATGCT-GCCAAACAGgtacattttt ... ccgttgtcagGTTGACCTGAAAGTTCCTGTT-GTTGTTCGGTTGGAAGGCACCAATGTAG
EST: TT-TAAAATGTGATGTGATAGCAAGTGGAATTGTTAATGCTGCCAAACAG GTTGACCTGAAAGTTCCTGTTGTTEST: gi|60354613|gb|DN221586.1|DN221586
genomic: TTATGAAATGTGATGTGATAGCAAGTGGAATTGTTAATGCTGCCAAACAGgtacattttt ... ccgttgtcagGTTGACCTGAAAGTTCCTGTTGTT
EST: TTATGAAATGTGATGTGATAGCAAGTGGAATTCTTAATGCTGCCAAACAT CTTGACCTGAAAGTTCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTAGAC
genomic: TTATGAAATGTGATGTGATAGCAAGTGGAATTGTTAATGCTGCCAAACAGgtacattttt ... ccgttgtcagGTTGACCTGAAAGTTCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTAGAC
atctcaggtttttcttgtactgaatattattgttaatttgcccaaccgttgtcagGTTGACCTGAAAGTTCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTAGACCAAGGAAAGAGGATTCTTAAG
tgttaat putative branch site (score: 3)
tactgaatattattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaccccataaggatcatgtttttttaggacctgtgctatgtatatctcaggtttttcttgtactgaatattattgttaatttgcccaaccgttgtcagGTTGACCTGAAAGTTCCTGTTGTTGTTCGGTTGGAAGGCACCAATGTAGACCAAGGAAAGAGGATTCTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT