1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaatacaacaaccacatcagttctatacttgcttcctcaattatttgatgtagtgaactgatattttaaattaatctgtacttttccagGGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAGAAAATTCCTCAACTGAAAACCTGATTTTTCTCAAGTTCACTGGAGCAAT
species | Zea mays |
transcript | GRMZM2G062761_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGAT GGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAGEST: gi|71444394|gb|DR825444.1|DR825444
genomic: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGATgtaatacaac ... acttttccagGGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAG
EST: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGAT GGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAGEST: gi|211233386|gb|FL465913.1|FL465913
genomic: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGATgtaatacaac ... acttttccagGGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAG
EST: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGAT GGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAGEST: gi|71326217|gb|DR799803.1|DR799803
genomic: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGATgtaatacaac ... acttttccagGGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAG
EST: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGAT GGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAGEST: gi|78179341|gb|DV549714.1|DV549714
genomic: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGATgtaatacaac ... acttttccagGGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAG
EST: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGAT GGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAGEST: gi|71430391|gb|DR811441.1|DR811441
genomic: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGATgtaatacaac ... acttttccagGGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAG
EST: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGAT GGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAGEST: gi|148942758|gb|EC887784.2|EC887784
genomic: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGATgtaatacaac ... acttttccagGGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAG
EST: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGAT GGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAGEST: gi|32934687|gb|CF039499.1|CF039499
genomic: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGATgtaatacaac ... acttttccagGGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAG
EST: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGAT GGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAGEST: gi|6827043|gb|AW330686.1|AW330686
genomic: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGATgtaatacaac ... acttttccagGGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAG
EST: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGAT GGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAGEST: gi|6827010|gb|AW330653.1|AW330653
genomic: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGATgtaatacaac ... acttttccagGGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAG
EST: GCATCAGTGCTTCCAAGTGTATAGGTGAAAANCCGAAGCATGTCAAAGAT GGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAGEST: gi|6952802|gb|AW424870.1|AW424870
genomic: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGATgtaatacaac ... acttttccagGGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAG
EST: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGAT GGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAGEST: gi|76018132|gb|DT945302.1|DT945302
genomic: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGATgtaatacaac ... acttttccagGGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAG
EST: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGAT GGAGAATCTGTTTTAGAGAGCGTGGATGAACCAGTCGATGATTTGTCGAAG
genomic: GCATCAGTGCTTCCAAGTGTATAGGTGAAAAACCGAAGCATGTCAAAGATgtaatacaac ... acttttccagGGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAG
cctcaattatttgatgtagtgaactgatattttaaattaatctgtacttttccagGGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAGAAAATTCCTCAACTGAAAACCTGATTTTTCTCAAGTTCACTGGAGCAAT
aattaat putative branch site (score: 79)
tacttttcc putative PPT
tgatattttaaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatacaacaaccacatcagttctatacttgcttcctcaattatttgatgtagtgaactgatattttaaattaatctgtacttttccagGGAGAATCTGTTTTAGAGAGCGTGGATGAAACAGTCGATGATTTGTCGAAGAAAATTCCTCAACTGAAAACCTGATTTTTCTCAAGTTCACTGGAGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA