1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagcccatttcaagtcacttcttctcactgcgtttagaagcatttctgtatcttgactttctgtgtatattttttctgttctctttagGGAGTGCTCGAGGATGATGGTAGACTTTCACCAGAAGGCTGGAACCGGCAAGCTCACTGGCGTGCACAGGAAGTACAGTACCTACAAGTTCGGGTGCGCG
species | Zea mays |
transcript | GRMZM2G061287_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGACAAAGGTTTGCGAGTCACATAGCAGATACACTGGCGACCAACTCCT GGAGTGCTCGAGGATGATGGTAGACTTTCACCAGAAGGCTGGAACCGGCAAEST: gi|78119998|gb|DV538382.1|DV538382
genomic: TGGACAAAGGTTTGCGAGTCACATAGCAGATACACTGGCGACCAACTCCTgtaagcccat ... ttctctttagGGAGTGCTCGAGGATGATGGTAGACTTTCACCAGAAGGCTGGAACCGGCAA
EST: TGGACAAAGGTTTGCGAGTCACATAGCAGATACACTGGCGACCCACTCCT GGAGTGCTCGAGGATGATGGTAGACTT
genomic: TGGACAAAGGTTTGCGAGTCACATAGCAGATACACTGGCGACCAACTCCTgtaagcccat ... ttctctttagGGAGTGCTCGAGGATGATGGTAGACTT
ttagaagcatttctgtatcttgactttctgtgtatattttttctgttctctttagGGAGTGCTCGAGGATGATGGTAGACTTTCACCAGAAGGCTGGAACCGGCAAGCTCACTGGCGTGCACAGGAAGTACAGTACCTACAAGTTCGGGTGCGCG
tcttgac putative branch site (score: 11)
tatattttttctgttc putative PPT
tatattttttctgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcccatttcaagtcacttcttctcactgcgtttagaagcatttctgtatcttgactttctgtgtatattttttctgttctctttagGGAGTGCTCGAGGATGATGGTAGACTTTCACCAGAAGGCTGGAACCGGCAAGCTCACTGGCGTGCACAGGAAGTACAGTACCTACAAGTTCGGGTGCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA