1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagtcttcgatgtgttatagatttttttgacagatcttaacacacataaacttttcttctcggcttagtatttcactgtttgacttccatcaatcagGAGGGTATTATGGACCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTAGACTTCCACAAGAAGCAAACACAGATGATCTAAGGCAGTACTTTGGCAG
species | Zea mays |
transcript | GRMZM2G060977_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCCTGGATCAGCTTATGGAA GAGGGTATTATGGACCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTAEST: gi|60352542|gb|DN219515.1|DN219515
genomic: TCCTGGATCAGCTTATGGAAgtaagtcttc ... catcaatcagGAGGGTATTATGGACCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTA
EST: AACTCTGGGTGCACCAACGCTGTATGACCATCCTGGATCAGCTTATGGAA GAGGGTATTATGGACCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTAEST: gi|113702665|gb|EE680169.1|EE680169
genomic: AACTCTGGGTGCACCAACGCTGTATGACCATCCTGGATCAGCTTATGGAAgtaagtcttc ... catcaatcagGAGGGTATTATGGACCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTA
EST: AACTCTGGGTGCACCAACGCTGTATGACCATCCTGGATCAGCTTATGGAA GAGGGTATTATGGACCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTAEST: gi|60342166|gb|DN209139.1|DN209139
genomic: AACTCTGGGTGCACCAACGCTGTATGACCATCCTGGATCAGCTTATGGAAgtaagtcttc ... catcaatcagGAGGGTATTATGGACCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTA
EST: TGGATCAGCTTATGGAA GAGGGTATTATGGACCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTAEST: gi|32837415|gb|CD977093.1|CD977093
genomic: TGGATCAGCTTATGGAAgtaagtcttc ... catcaatcagGAGGGTATTATGGACCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTA
EST: AACTCTGGGTGCACCAACGCTGTATGACCATCCTGGATCAGCTTATGGAA GAGGGTATTATGGACCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTAEST: gi|148942651|gb|EC887670.2|EC887670
genomic: AACTCTGGGTGCACCAACGCTGTATGACCATCCTGGATCAGCTTATGGAAgtaagtcttc ... catcaatcagGAGGGTATTATGGACCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTA
EST: AACTCTGGGTGCACCAACGCTGTATGACCATCCTGGATCAGCTTATGGAA GAGGGTATTATGGACCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTAEST: gi|211424816|gb|FL445164.1|FL445164
genomic: AACTCTGGGTGCACCAACGCTGTATGACCATCCTGGATCAGCTTATGGAAgtaagtcttc ... catcaatcagGAGGGTATTATGGACCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTA
EST: AACTCT-GGTGCACCAACGCTGTATGACCATCCTGGATCAGCTTATGGAA GAGGGTATTATGGGCCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTAEST: gi|211138006|gb|FL213711.1|FL213711
genomic: AACTCTGGGTGCACCAACGCTGTATGACCATCCTGGATCAGCTTATGGAAgtaagtcttc ... catcaatcagGAGGGTATTATGGACCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTA
EST: AACTCTGGGTGCACCAACGCTGTATGACCATCCTGGATCAGCTTATGGAA GAGGGTATTATGGGCCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTAEST: gi|32864876|gb|CF004558.1|CF004558
genomic: AACTCTGGGTGCACCAACGCTGTATGACCATCCTGGATCAGCTTATGGAAgtaagtcttc ... catcaatcagGAGGGTATTATGGACCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTA
EST: AACTCTGGGTGCACCAACGCTGTATGACCATCCTGGATCAGCTTATGGAA GAGGGTATTATGGACCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTA
genomic: AACTCTGGGTGCACCAACGCTGTATGACCATCCTGGATCAGCTTATGGAAgtaagtcttc ... catcaatcagGAGGGTATTATGGACCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTA
cacataaacttttcttctcggcttagtatttcactgtttgacttccatcaatcagGAGGGTATTATGGACCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTAGACTTCCACAAGAAGCAAACACAGATGATCTAAGGCAGTACTTTGGCAG
gtttgac putative branch site (score: 126)
cttccatc CT-rich tract
ttagtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcttcgatgtgttatagatttttttgacagatcttaacacacataaacttttcttctcggcttagtatttcactgtttgacttccatcaatcagGAGGGTATTATGGACCCTCTCAAGCAGTGGGCAAGAAGATATTTGTTGGTAGACTTCCACAAGAAGCAAACACAGATGATCTAAGGCAGTACTTTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG