1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cctactgttcctgtttttcactcgccgattaaactgcaactcttgtgacattgcttccatggagcctccttcaccctgactagtttccatcattgaacagATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAAGCATATTGCGTTTCCACTGAAACA
species | Zea mays |
transcript | GRMZM2G060896_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAG ATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAAEST: gi|5714138|gb|AI944123.1|AI944123
genomic: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAGgtccgttctc ... cattgaacagATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAA
EST: TGGAAGGAGCT-CAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAG ATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAAEST: gi|45567480|gb|CK985592.1|CK985592
genomic: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAGgtccgttctc ... cattgaacagATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAA
EST: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAG ATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAAEST: gi|5847113|gb|AW000192.1|AW000192
genomic: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAGgtccgttctc ... cattgaacagATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAA
EST: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAG ATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAAEST: gi|40303182|gb|CK347569.1|CK347569
genomic: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAGgtccgttctc ... cattgaacagATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAA
EST: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAATTCAGAG ATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAAEST: gi|37394872|gb|CF634714.1|CF634714
genomic: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAGgtccgttctc ... cattgaacagATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAA
EST: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAG ATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAAEST: gi|6056688|gb|AW091093.1|AW091093
genomic: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAGgtccgttctc ... cattgaacagATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAA
EST: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAG ATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAAEST: gi|5597203|gb|AI891196.1|AI891196
genomic: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAGgtccgttctc ... cattgaacagATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAA
EST: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAG ATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAAEST: gi|37390214|gb|CF632335.1|CF632335
genomic: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAGgtccgttctc ... cattgaacagATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAA
EST: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAG ATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAAEST: gi|6095484|gb|AW120151.1|AW120151
genomic: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAGgtccgttctc ... cattgaacagATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAA
EST: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAG ATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAAEST: gi|71305268|gb|DR788768.1|DR788768
genomic: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAGgtccgttctc ... cattgaacagATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAA
EST: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAATTCAGAG ATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAAEST: gi|9731445|gb|BE510197.1|BE510197
genomic: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAGgtccgttctc ... cattgaacagATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAA
EST: TGGAAGGAGCTACAAAAGCTGGAAAGGAGATCAGATTTTATAACTCAGAG ATGCATAGGGCAGCATTTGTEST: gi|6022576|gb|AW067388.1|AW067388
genomic: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAGgtccgttctc ... cattgaacagATGCATAGGGCAGCATTTGT
EST: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATACCTCAGAG ATGCATAGGGCAGCATTTGTTCTCCCGACCTTGGCAAGGAGAGAGCTAGAAEST: gi|32850727|gb|CD990408.1|CD990408
genomic: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAGgtccgttctc ... cattgaacagATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAA
EST: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAG ATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAAEST: gi|5525664|gb|AI861557.1|AI861557
genomic: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAGgtccgttctc ... cattgaacagATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAA
EST: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAG ATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAAEST: gi|37389864|gb|CF632156.1|CF632156
genomic: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAGgtccgttctc ... cattgaacagATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAA
EST: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAG ATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAAEST: gi|40303414|gb|CK347801.1|CK347801
genomic: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAGgtccgttctc ... cattgaacagATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAA
EST: TGGAAGGAGCTACTAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAG ATGCATAGGTCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAA
genomic: TGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAGgtccgttctc ... cattgaacagATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAA
tgacattgcttccatggagcctccttcaccctgactagtttccatcattgaacagATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAAGCATATTGCGTTTCCACTGAAACA
ccctgac putative branch site (score: 72)
tttccatc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctactgttcctgtttttcactcgccgattaaactgcaactcttgtgacattgcttccatggagcctccttcaccctgactagtttccatcattgaacagATGCATAGGGCAGCATTTGTTCTCCCGACCTTTGCAAGGAGAGAGCTAGAAGCATATTGCGTTTCCACTGAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC