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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcggtttaaattttgttggttactagctaatggcataacttagcctagaaaaatatattatgatggataatgttgataatttacttctctttcattagTCTTCAAAAGGTCGAAGACCAGGAGCGGACGATATTGATGCTTCTTCTCGTCTTCCACTTCTCAATAATGTTTACTACAGAGATATTCTTGGTGAATTTG

Basic information

species Zea mays
transcript GRMZM2G053047_T03
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G053047_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os01g43380.1 (Oryza sativa), 3'ss of exon 4
tttcggtt--taaattttgttggttactagctaatggcataacttagcctagaaaaatatatta-tgatggataatg-ttgataatttacttctctttcattagTCTTCAAAAGGTCGAAGACCAGGAGCGGACGATATTGATGCTTCTTCTCGTCTTCCACTTCTCAATAATGTTTACTACAGAGATATTCTTGGTGAATTTG
      ||  | ||   | |   |  ||||| ||    |||| | |   |    ||||||   | |||   | | || |  || |  |   | | ||| |||||||||||||||||||||| || || || || || |||||||||||||||||||||||||| || || ||||  ||||||||||||||||||||||||||||
--gtaattgatgaaacatatatatggctagccaa--atataattgactgtttccaaatattccaatgacttacattgatcaatgaagtttatttttttgattagTCTTCAAAAGGTCGAAGGCCTGGCGCAGATGACATTGATGCTTCTTCTCGTCTTCCACTGCTGAACAATGGGTACTACAGAGATATTCTTGGTGAATTTG

upper sequence: GRMZM2G053047_T02 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA16G03340.1 (Glycine max), 3'ss of exon 9
--------tttcggtttaaattttgttggttactagctaatggcataacttagcctagaa-aaatatattatgat----ggataatgttgataatttacttctctttcattagTCTTCAAAAGGTCGAAGACCAGGAGCGGACGATATTGATGCTTCTTCTCGTCTTCCACTTCTCAATAATGTTTACTACAGAGATATTCTTGGTGAATTTG
        | |  | ||  ||||| |    || | |    |   ||  |  | | || ||  | |   || ||||       | |||   || || ||||     ||    ||||    |||||||||||||||||    || ||| | |||||| |||||||||||||||| || ||||||| ||||||  ||||| | |||||||||| ||
gtaagttgtgtgtgcttgtattttctgtaatagttgtgctttctatt-cagaacttataatgagtggcttctgatttcaatctgatgc-aatgatgtactggatgtttgc-agTCCGGTAAAGGTCGAAGACCAGGGAGAGATGATGTCGATGCTCCTTCTCGTCTTCCACTGCTTAATAATGGTTACTATCGAGATTTACTTGGTGAATATG

upper sequence: GRMZM2G053047_T02 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA07G06780.1 (Glycine max), 3'ss of exon 9
tttcggtttaaattttgttggttactagcta-atggcataacttagcctagaaa--aatatattatgat----ggataatgttgataatttacttctctttcattagTCTTCAAAAGGTCGAAGACCAGGAGCGGACGATATTGATGCTTCTTCTCGTCTTCCACTTCTCAATAATGTTTACTACAGAGATATTCTTGGTGAATTTG
       | || | || |    || | | |       |||       ||   ||  |||   || ||||       | | |     ||| ||||     ||    ||||    |||||||||||||||||    || ||| |||||||| |||||||||||||||| || ||||||| ||||||  ||||| | ||| |||| | ||
------ctcaattcttctgtaatagttgttgtgctttatattcagaactgataatgaatggcttctgatttcaatctgacgcaatgaatgtactggatgtttgc-agTCCGGTAAAGGTCGAAGACCAGGGAGAGATGATGTTGATGCTCCTTCTCGTCTTCCACTGCTGAATAATGGTTACTATCGAGATTTACTTAGTGATTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctagaaaaatatattatgatggataatgttgataatttacttctctttcattagTCTTCAAAAGGTCGAAGACCAGGAGCGGACGATATTGATGCTTCTTCTCGTCTTCCACTTCTCAATAATGTTTACTACAGAGATATTCTTGGTGAATTTG
                           tgttgat  putative branch site (score: 4)
                                    tttacttctctttcat  putative PPT
     aaaaatatattatgat  TA-rich tract