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gttggcggttgatactagtgtttacactttttgcctggaccattttgattctgtaaagctaaactgtgattttctgtttttttcaaacccatcggagcagCAAGGTTATCTTGACCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAG
species | Zea mays |
transcript | GRMZM2G052926_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATTTCACAAATCCATCGTTGCCTACAGAACAACGTCCTAGGGCCTCTCAG CAAGGTTATCTTGACCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAGEST: gi|67014377|gb|CO443126.1|CO443126
genomic: ATTTCACAAATCCATCGTTGCCTACAGAACAACGTCCTAGGGCCTCTCAGgttggcggtt ... atcggagcagCAAGGTTATCTTGACCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAG
EST: ATTTCACAAATCCATCGTTGCCTACAGAACAACGTCCTAGGGCCTCTCAG CAAGGTTATCTTGACCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAGEST: gi|31358368|gb|CD442725.1|CD442725
genomic: ATTTCACAAATCCATCGTTGCCTACAGAACAACGTCCTAGGGCCTCTCAGgttggcggtt ... atcggagcagCAAGGTTATCTTGACCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAG
EST: ATTTCACAAATCCATCGTTGCCTACAGAACAACGTCCTAGGGCCTCTCAG CAAGGTTATCTTGACCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAGEST: gi|211448114|gb|FL293416.1|FL293416
genomic: ATTTCACAAATCCATCGTTGCCTACAGAACAACGTCCTAGGGCCTCTCAGgttggcggtt ... atcggagcagCAAGGTTATCTTGACCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAG
EST: ATTTCACAAATCCATCGTTGCCTACAGAACAACGTCCTAGGGCCTCTCAG CAAGGTTATCTTGACCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAGCEST: gi|61118023|gb|DN558984.1|DN558984
genomic: ATTTCACAAATCCATCGTTGCCTACAGAACAACGTCCTAGGGCCTCTCAGgttggcggtt ... atcggagcagCAAGGTTATCTTGACCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAGC
EST: ATTTCACAAATCCATCGTTGCCTACAGAACAACGTCCTAGGGCCTCTCAG CAAGGTTATCTTGACCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAGEST: gi|78080905|gb|DV509317.1|DV509317
genomic: ATTTCACAAATCCATCGTTGCCTACAGAACAACGTCCTAGGGCCTCTCAGgttggcggtt ... atcggagcagCAAGGTTATCTTGACCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAG
EST: ATTTCACAAATCCATCGTTGCCTACAGAACAACGTCCTAGGGCCTCTCAG CAAGGTTATCTTGACCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAGEST: gi|32943654|gb|CF048473.1|CF048473
genomic: ATTTCACAAATCCATCGTTGCCTACAGAACAACGTCCTAGGGCCTCTCAGgttggcggtt ... atcggagcagCAAGGTTATCTTGACCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAG
EST: ATTTCACAAATCCATCGTTGCCTACAGAACAACGTCCTAGGGCCTCTCAG CAAGGTTATCTTGACCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAG
genomic: ATTTCACAAATCCATCGTTGCCTACAGAACAACGTCCTAGGGCCTCTCAGgttggcggtt ... atcggagcagCAAGGTTATCTTGACCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAG
tgattctgtaaagctaaactgtgattttctgtttttttcaaacccatcggagcagCAAGGTTATCTTGACCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAG
agctaaa putative branch site (score: 76)
attttctgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggcggttgatactagtgtttacactttttgcctggaccattttgattctgtaaagctaaactgtgattttctgtttttttcaaacccatcggagcagCAAGGTTATCTTGACCCAGCTAATCTCTATGCCTTCCAACAAGCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA