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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaatgcagaactaatttctcagtagtagttatgttggagaagatgaatacagatcatggcgagtcaaagattttcctactaagtgatggctgtcgtattatttagCTGACAGGATTATCCAAAAACACAATCACTTTGAAGTGGGAAGCTGATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAG

Basic information

species Zea mays
transcript GRMZM2G052546_T07
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052546_T07 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os03g01750.5 (Oryza sativa), 3'ss of exon 9
gtaagtgaatgcagaacta-atttct------------cagta-gtagttatgttggagaagatgaatacagatcatggcgagtcaaagattttcctactaagtgatggctgtcgtattatttagCTGACAGGATTATCCAAAAACACAATCACTTTGAAGTGGGAAGCTGATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAG
|||||||||  |  | | | ||||||            ||||  ||||||||| |||  ||||| ||       ||  ||  ||  ||   |||  | |||||||||| || || || | ||||||||||||| ||||| || ||  | ||||||||||||||||||  |||| ||| ||| |||||||||||||||||||| ||  | || ||||| |||
gtaagtgaacactcaccaatatttctttttttttccctcagtgtgtagttatgatggttaagataaa----aggcactgcttgtacaa---ttttgtgctaagtgatgactctcttaatgtttagCTGACAGGCTTATCAAAGAATTCCATCACTTTGAAGTGGGAAAGTGATAGTTGTTCTTCTGTTGAAATTTCTGGGCTTGATGTCGGGTGGGGACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21621474|gb|BQ619480.1|BQ619480
EST:     GGCNTTGCTTNNCGA-GTTGGAAGCCATTAAGTTTGCAACTGCTGACATT                         CTGACAGGGAT-ATCCAAAA-CACA-TCACTTTTGAAGTGGGAAGCTGATG
genomic: GGC-TTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCTGACATTgtaagtgaat ... tattatttagCTGACAGG-ATTATCCAAAAACACAATCACTTT-GAAGTGGGAAGCTGATG
EST: gi|67023551|gb|CO452300.1|CO452300
EST:     GGGCTTGCTTTCCTAAGTTGGAAGCCATTAAGTTGGCAACTGCTGACATT                         CTGACAGGATTATCCAAAAACACAATCACTTTGAAGTGGGAAGCTGATGGT
genomic: GGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCTGACATTgtaagtgaat ... tattatttagCTGACAGGATTATCCAAAAACACAATCACTTTGAAGTGGGAAGCTGATGGT
EST: gi|32833578|gb|CD973256.1|CD973256
EST:     GGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCTGACATT                         CTGACAGGATTATCCAAAAACACAATCACTTTGAAGTGGGAAGCTGATGGT
genomic: GGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCTGACATTgtaagtgaat ... tattatttagCTGACAGGATTATCCAAAAACACAATCACTTTGAAGTGGGAAGCTGATGGT
EST: gi|74234762|gb|DT642676.1|DT642676
EST:     GGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCTGACATT                         CTGACAGGATTATCCAAAAACACAATCACTTTGAAGTGGGAAGCTGATGGT
genomic: GGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCTGACATTgtaagtgaat ... tattatttagCTGACAGGATTATCCAAAAACACAATCACTTTGAAGTGGGAAGCTGATGGT
EST: gi|32833853|gb|CD973531.1|CD973531
EST:     GGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCTGACATT                         CTGACAGGATTATCCAAAAACACAATCACTTTGAAGTGGGAAGCTGATGGT
genomic: GGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCTGACATTgtaagtgaat ... tattatttagCTGACAGGATTATCCAAAAACACAATCACTTTGAAGTGGGAAGCTGATGGT
EST: gi|33091895|gb|CF051889.1|CF051889
EST:     GGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCTGACATT                         CTAACAGGATTATCCAAAAACACAATCACTTTGAAGTGGGAAGCTGATGGT
genomic: GGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCTGACATTgtaagtgaat ... tattatttagCTGACAGGATTATCCAAAAACACAATCACTTTGAAGTGGGAAGCTGATGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatcatggcgagtcaaagattttcctactaagtgatggctgtcgtattatttagCTGACAGGATTATCCAAAAACACAATCACTTTGAAGTGGGAAGCTGATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAG
                                             tattattta  TA-rich tract