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gtatttttttttgttgacaactatttttcctatgtttcttttcaaatcaattctcagtggaattttgaattatttacttgacagCCTTAAGCATGGGCTCAACATGCTGCAAAGCATGCAAAGTGATAACAAGAGCTCGAAAAAATCACTGAAG
species | Zea mays |
transcript | GRMZM2G052403_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATTGAAACCTCCAACTCGAAGGATAATAAACTTGTACTCACAAGTGAAAG CCTTAAGCATGGGCTCAACATGCTGCAAAGCATGCAAAGTGATAACAAGAGEST: gi|67034427|gb|CO462977.1|CO462977
genomic: ATTGAAACCTCCAACTCGAAGGATAATAAACTTGTACTCACAAGTGAAAGgtattttttt ... tacttgacagCCTTAAGCATGGGCTCAACATGCTGCAAAGCATGCAAAGTGATAACAAGAG
EST: ATTGAAACCTCCAACTCGAAGGATAATAAACTTGTACTCACAAGTGAAAG CCTTAAGCATGGGCTCAACATGCTGCAAAGCATGCAAAGTGATAACAAGAGEST: gi|60399121|gb|DN231935.1|DN231935
genomic: ATTGAAACCTCCAACTCGAAGGATAATAAACTTGTACTCACAAGTGAAAGgtattttttt ... tacttgacagCCTTAAGCATGGGCTCAACATGCTGCAAAGCATGCAAAGTGATAACAAGAG
EST: ATTGAAACCTCCAACTCGAAGGATAATAAACTTGTACTCACAAGTGAAAG CCTTAAGCATGGGCTCAACATGCTGCAAAGCATGCAAAGTGATAACAAGAGEST: gi|211051787|gb|FL187605.1|FL187605
genomic: ATTGAAACCTCCAACTCGAAGGATAATAAACTTGTACTCACAAGTGAAAGgtattttttt ... tacttgacagCCTTAAGCATGGGCTCAACATGCTGCAAAGCATGCAAAGTGATAACAAGAG
EST: ATTGAAACCTNCAACTNGAAGGATAATAAACTTGTACTCACAAGTGAAAG CCTTAAGCATGGGCTGAACATGCTGEST: gi|211051788|gb|FL187606.1|FL187606
genomic: ATTGAAACCTCCAACTCGAAGGATAATAAACTTGTACTCACAAGTGAAAGgtattttttt ... tacttgacagCCTTAAGCATGGGCTCAACATGCTG
EST: ATTGAAACCTCCAACTCGAAGGATAATAAACTTGTACTCACAAGTGAAAG CCTTAAGCATGGGCTCAACATGCTGCAAAGCATGCAAAG--ATAACAAGAGEST: gi|211048839|gb|FL187599.1|FL187599
genomic: ATTGAAACCTCCAACTCGAAGGATAATAAACTTGTACTCACAAGTGAAAGgtattttttt ... tacttgacagCCTTAAGCATGGGCTCAACATGCTGCAAAGCATGCAAAGTGATAACAAGAG
EST: ATTGAAACCTCCAACTCGAAGGATAATAAACTTGTACTCACAAGTGAAAG CCTTAAGCATGGGCTCAACATGCTGCAAAGCATGCAAAGTGATAACAAGAG
genomic: ATTGAAACCTCCAACTCGAAGGATAATAAACTTGTACTCACAAGTGAAAGgtattttttt ... tacttgacagCCTTAAGCATGGGCTCAACATGCTGCAAAGCATGCAAAGTGATAACAAGAG
ctatgtttcttttcaaatcaattctcagtggaattttgaattatttacttgacagCCTTAAGCATGGGCTCAACATGCTGCAAAGCATGCAAAGTGATAACAAGAGCTCGAAAAAATCACTGAAG
tttactt CT-rich tract
aattttgaattattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttttttttgttgacaactatttttcctatgtttcttttcaaatcaattctcagtggaattttgaattatttacttgacagCCTTAAGCATGGGCTCAACATGCTGCAAAGCATGCAAAGTGATAACAAGAGCTCGAAAAAATCACTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG