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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttagatcgtcagcattattttatatgctagaagggacttataacttttttactatgacttgtcctaagcagGTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCGATCCAATAAG

Basic information

species Zea mays
transcript GRMZM2G051138_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G051138_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os03g13850.1 (Oryza sativa), 3'ss of exon 10
gtatttagatcgtcagcattattttatatgctagaagggacttataacttttttactatgacttgtcctaagcagGTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCGATCCAATAAG
|||  |   | || |  ||   || || ||   ||    |  |  |   ||||| || ||| ||| | |||||||||||||||||||||| ||||| ||  | ||||| | ||| || |||| ||||||||  |||
gtaccttccttgtgaatatgggttcatctgacggatctcaaattgatagtttttgctgtgatttggc-taagcagGTGGCATACAATCCGTAGCCCAAGAGTTTGGCAGATTGAACAGTCATTTCGATCCAGAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6526840|gb|AW216109.1|AW216109
EST:     GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACGCCATCAAG                         GTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG
genomic: GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACACCATCAAGgtatttagat ... tcctaagcagGTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG
EST: gi|91875851|gb|EB405808.1|EB405808
EST:     GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACACCATCAAG                         GTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG
genomic: GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACACCATCAAGgtatttagat ... tcctaagcagGTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG
EST: gi|6466789|gb|AW191449.1|AW191449
EST:     GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACACCATCAAG                         GTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG
genomic: GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACACCATCAAGgtatttagat ... tcctaagcagGTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG
EST: gi|78079476|gb|DV507888.1|DV507888
EST:     GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACACCATCAAG                         GTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG
genomic: GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACACCATCAAGgtatttagat ... tcctaagcagGTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG
EST: gi|78122197|gb|DV540581.1|DV540581
EST:     GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACACCATCAAG                         GTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG
genomic: GTTGCGGCACGGGGAGTTCTTTTTGGAAATGCTCATGTCACACCATCAAGgtatttagat ... tcctaagcagGTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttatatgctagaagggacttataacttttttactatgacttgtcctaagcagGTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCGATCCAATAAG
                     ttataac  putative branch site (score: 2)
                                         cttgtcct  putative PPT
                     ttataacttttttact  TA-rich tract