Sequence
atgc intronic sequence ATGC exonic sequence...tttccatttggatattgataactgaaacaactataaaatttgatactctgttattctttgtctcctagtggggtcagatgattatgcatcgtggttgcagGTGTTAATGGTTGCTCTCTGAAAACTAACGAAAATCTTGAGGTTCTACGAGGCATTCCTGTCGAGAGGTTGATGATAGAAACAGATTCTCCATATTGTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G051032_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os07g06440.1 (Oryza sativa), 3'ss of exon 9
-tttccatttggatattgataactgaaacaactataaaatttgatactctgttattctttgtctcctagtggggtcagatgattatgcatcgtg-gttgcagGTGTTAATGGTTGCTCTCTGAAAACTAACGAAAATCTTGAGGTTCTACGAGGCATTCCTGTCGAGAGGTTGATGATAGAAACAGATTCTCCATATTGTGA
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aattagatgtgaatacaaatattagtagcaattaaaacgtctcattccattataattcagttatgtcaggtaaaccatac--tgacttaatgtacaatgcagGTATTAATGGATGCTCTCTGAAGACTAGTGAAAATCTTGAGGTTCTACAAGGTATTCCTGCAGAGAGGATGATGATAGAGACAGACTCTCCATACTGTGA
upper sequence: GRMZM2G051032_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os07g06410.5 (Oryza sativa), 3'ss of exon 7
tttccatttggatattgataactgaaacaactataaaatttgatactctgttattctttg--tctcctagtggggtcagatgattatgcatcgtggttgcagGTGTTAATGGTTGCTCTCTGAAAACTAACGAAAATCTTGAGGTTCTACGAGGCATTCCTGTCGAGAGGTTGATGATAGAAACAGATTCTCCATATTGTGA-----------------------
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------------------------tagcaattaaaacgttct-cattccattataattcagttatgtcaggtaaaccatactgacttaatgtaccaatgcatgtattaatggatgctctctgaagACTAGTGAAAATTTCGAGGTTCTACAAGGTATTCCTGCAGAGAGAATGATGATAGAGACAGACTCTCCATACTGTGATATTAAAAATACTCATGCTGGAA
upper sequence: GRMZM2G051032_T01 (Zea mays), 3'ss of exon 10
lower sequence: Vv08s0032g01170.t01 (Vitis vinifera), 3'ss of exon 9
-----tttccatttggatattgataactgaaacaactataaaatttgatactctgttattctttgtctcctagtggggtcagatgattatgcatcgtggttg-cagGTGTTAATGGTTGCTCTCTGAAAACTAACGAAAATCTTGAGGTTCTACGAGGCATTCCTGTCGAGAGGTTGATGATAGAAACAGATTCTCCATATTGTGA
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ataattttctgcttggtttttgttttcttg------tatatgacttttcacttagatgtcagatgaatcttaataatctttgttcttttttctttgtacccaatagGTGTAAATGGTTGCTCTCTGAAGACTGCTGAAAATCTTGAAGTTGTAAGGGGTATTCCTGTTGAGAGACTGATGATTGAGACAGATTCTCCATATTGTGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctctgttattctttgtctcctagtggggtcagatgattatgcatcgtggttgcagGTGTTAATGGTTGCTCTCTGAAAACTAACGAAAATCTTGAGGTTCTACGAGGCATTCCTGTCGAGAGGTTGATGATAGAAACAGATTCTCCATATTGTGA
ttattcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttccatttggatattgataactgaaacaactataaaatttgatactctgttattctttgtctcctagtggggtcagatgattatgcatcgtggttgcagGTGTTAATGGTTGCTCTCTGAAAACTAACGAAAATCTTGAGGTTCTACGAGGCATTCCTGTCGAGAGGTTGATGATAGAAACAGATTCTCCATATTGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG