Sequence
atgc intronic sequence ATGC exonic sequencegtactgttcgttaactcattgcaatctgctgtctcctcccagtcttcatctaaggtttttcggtttttcttttaaacaaaaaaagACGGCAGGATTCATCTATTGGTTTCGGCGCCCCAGTTCGTGCAAACATGAGGGCTGGTGGCATTTCAAGTGCTCAAGTGACATCATCCTTGTTGGAATCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G050186_T06 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os02g35630.1 (Oryza sativa), 3'ss of exon 9
-------gtactgttcgttaa------ctcattgcaa------tctgctgtctcctcccag-tcttcatctaaggttttt----cggtttttcttttaaacaaaaaaagACGGCAGGATTCATCTATTGGTTTCGGCGCCCCAGTTCGTGCAAACATGAGGGCTGGTGGCATTTCAAGTGCTCAAGTGACATCATCCTTGTTGGAATCT
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gtattgcatattgatctttgagacttacctattggaacaattgtctccaatgttttctcaaatcgtcatctaatgtatttgcacctgctttaatttttaa--aaatcagGCGGCAAGATTCTTCTATTGGCTTTGGGGCACCTGTCCGTGCTAACATGAGGGCAGGTGGCATCTCAAGTGCTCAAGTGACATCATCCTTGTTGGAATCA
upper sequence: GRMZM2G050186_T06 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA16G33080.1 (Glycine max), 3'ss of exon 10
-----------------------gtactgttcgttaactcattgcaatctgctgtctcctc-ccagtcttcatctaaggtttttcggtttttcttttaaacaaaaaaagACGGCAGGATTCATCTATTGGTTTCGGCGCCCCAGTTCGTGCAAACATGAGGGCTGGTGGCATTTCAAGTGCTCAAGTGACATCATCCTTGTTGGAATCT
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gtaatgttggcctttgtcttgcaaaaatatttgctcataaatcacagttggtttacatatgacttggtttctgctgtactaacttatacgatttatcaaataaacca-gACGACAAGATTCTTCTATTGGTTTTGGAGCACCAGTTCGTGCCAATATGAGAGCTGGTGGAATAACAGATTCTGCAGTAACATCATCTTTACTTGAGTCA
upper sequence: GRMZM2G050186_T06 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA09G28260.1 (Glycine max), 3'ss of exon 10
-------------------------gtactgttcgttaactcattgcaatctgctgtctcct--cccagtcttcatctaaggtttttcgg--tttttcttttaaacaaaaaaa---gACGGCAGGATTCATCTATTGGTTTCGGCGCCCCAGTTCGTGCAAACATGAGGGCTGGTGGCATTTCAAGTGCTCAAGTGACATCATCCTTGTTGGAATCT
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gtaaaatgttggccttcggcttgcaaaaatatttgctcataaatcacagttggtttacatatgtcttggtttctgtcggagtattcactaacttgtactatttatcaaataaaccagACGACAAGATTCTTCTATTGGTTTTGGAGCCCCAGTTCGTGCAAATATGAGAGCTGTTGGAATAACAGATTCTGCAGTAACATCATCTTTACTTGAGTCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9028559|gb|BE238554.1|BE238554EST: TTTATATGTGGTGGTGCTTTCGTGGATTTGGAAAAAACTATATCAGAGAG ACGGCAGGATTCATCTATTGGTTTCGGCGCCCCAGTTCGT
genomic: TTTATATGTGGTGGTGCTTTCGTGGATTTGGAAAAAACTATATCAGAGAGgtactgttcg ... acaaaaaaagACGGCAGGATTCATCTATTGGTTTCGGCGCCCCAGTTCGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtctcctcccagtcttcatctaaggtttttcggtttttcttttaaacaaaaaaagACGGCAGGATTCATCTATTGGTTTCGGCGCCCCAGTTCGTGCAAACATGAGGGCTGGTGGCATTTCAAGTGCTCAAGTGACATCATCCTTGTTGGAATCT
tttttcttttaaacaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtactgttcgttaactcattgcaatctgctgtctcctcccagtcttcatctaaggtttttcggtttttcttttaaacaaaaaaagACGGCAGGATTCATCTATTGGTTTCGGCGCCCCAGTTCGTGCAAACATGAGGGCTGGTGGCATTTCAAGTGCTCAAGTGACATCATCCTTGTTGGAATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG