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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttctgatttcacagttggggacatctgtttttttatttgtttcactttactggaacattggtctttatgtaggtaaaactgaaaacgatgttttgttatgagagttaatctgtttcaatttcctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG

Basic information

species Zea mays
transcript GRMZM2G048371_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048371_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os10g08550.3 (Oryza sativa), 3'ss of exon 9
gttagtttctgatttcacagttggggacatctgtttttttatttgtttcactttactggaacattggtctttatgtaggtaaaactgaaaacgatgt-tttgttatgagagttaatctgtttcaatttcctgatact--agGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG
                                    |    | |||||   | || || | |  |  ||  ||  |||   |||   |||   || |  ||   ||| |  || |   ||||   ||   ||||| |  |||| |||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||
-----------------------------------ataacttctgttttgatgta-tgaagc--taatccgtaattag---aaatctaaatgaatatacttagcatgtggtttgaatcgtttgtgttgtgtgatattgcagGAAAACAAGGAGGGTCTTGAGCTCTTGAAGACTGCAATTGAAAAGGCTGGATACACTGGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67016579|gb|CO445328.1|CO445328
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTNTGCTNCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAA-CTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|6021395|gb|AW066323.1|AW066323
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGG
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGG
EST: gi|67011307|gb|CO440056.1|CO440056
EST:     AAGATGCCACGAATGTTGGTGACGAAAGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGGAAG-ACTTGAGCTCTTGAAA-CTGCAATTGAGAAGGCTGG
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGG-AAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGG
EST: gi|60358894|gb|DN225867.1|DN225867
EST:     TTTTGCTCCG-ACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: TTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|211377302|gb|FL186755.1|FL186755
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|31360635|gb|CD444992.1|CD444992
EST:     CACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: CACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|60399892|gb|DN232702.1|DN232702
EST:     GGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: GGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|61118137|gb|DN559098.1|DN559098
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|211377303|gb|FL186756.1|FL186756
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|32826370|gb|CD966048.1|CD966048
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|31355741|gb|CD440098.1|CD440098
EST:     AAGATGCCATGAAAGGTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGATTCCTGAAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|76294188|gb|DV033756.1|DV033756
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|211425250|gb|FL005768.1|FL005768
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|31354997|gb|CD439354.1|CD439354
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|31357159|gb|CD441516.1|CD441516
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|28931188|gb|CB334549.1|CB334549
EST:     CGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: CGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|67026276|gb|CO455025.1|CO455025
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|67023203|gb|CO451952.1|CO451952
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTNGAGCTCTTGTAAACTGCA-TTGGAGAAGGCTGG
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTG-AGAAGGCTGG
EST: gi|5268740|gb|AI770704.1|AI770704
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|67011056|gb|CO439805.1|CO439805
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAAACA-GGAAGGACTTGAGCTCTTGAAA-CTGCAATTGAGAAG-CTGG
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAA-CAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGG
EST: gi|31353433|gb|CD437790.1|CD437790
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|31353535|gb|CD437892.1|CD437892
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|67022401|gb|CO451150.1|CO451150
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|31352214|gb|CD436571.1|CD436571
EST:     GTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: GTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|213179295|gb|FM184302.1|FM184302
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|67018108|gb|CO446857.1|CO446857
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCTAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|31361447|gb|CD445804.1|CD445804
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|111991147|gb|EE332203.1|EE332203
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|21987719|gb|BQ779247.1|BQ779247
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|60347267|gb|DN214240.1|DN214240
EST:     GTTTTGCTCCGAA-ATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: GTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|67022560|gb|CO451309.1|CO451309
EST:     CGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: CGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|67011708|gb|CO440457.1|CO440457
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGA-CATCCAC                         GAGA-CAAGGAAGGACTTGAGCTCTTGAAA-CTGCA-TTGAGAAG-CTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|8367282|gb|BE050227.1|BE050227
EST:     AAGATNCCGCGAATGGTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|67030419|gb|CO459168.1|CO459168
EST:     AGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCNAG                         -AGAACAAGGAAGGACTTGAGCTCTTGAAA-CTGCAATTGAGAAGGCTGG
genomic: AGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCC-AGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGG
EST: gi|76281562|gb|DV021130.1|DV021130
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAAGGA-GGACTTGAGCTCTTTGAAA-CTGCAATTG
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAA-GGAAGGACTTGAGCTCTT-GAAAACTGCAATTG
EST: gi|67010780|gb|CO439529.1|CO439529
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|67040510|gb|CO466765.1|CO466765
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACNAGGAAGGACTTGAGCTCTTNGAAA-CTGNCA-TTGAGAAGGCTG
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTT-GAAAACTG-CAATTGAGAAGGCTG
EST: gi|60338715|gb|DN205688.1|DN205688
EST:     TTTTGCTCCG-ACATCCAG                         GAGAAC-AGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: TTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|60398686|gb|DN231502.1|DN231502
EST:     TGCTCCGAAC-TCCAG                         GAGAAC-AGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: TGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|67021372|gb|CO450121.1|CO450121
EST:     AAGATGCCACGAATGTTGGTGACGAAAGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGACCTCTTGGAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|74234275|gb|DT642189.1|DT642189
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCA
EST: gi|14204058|gb|BG837735.1|BG837735
EST:     AGATCCCACGAATGTTTGKTGCCGAA-GTGGTTTTSCYCCGAACATCCAG                         GAGAACAAGGAAGGACTTGGA-CTCTTGAAAACTGCAATTGAGAAGGCTGG
genomic: AGATGCCACGAATG-TTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTT-GAGCTCTTGAAAACTGCAATTGAGAAGGCTGG
EST: gi|33094991|gb|CF054985.1|CF054985
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|32915417|gb|CF020229.1|CF020229
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|29577151|gb|CB617263.1|CB617263
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTG
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTG
EST: gi|31351690|gb|CD436047.1|CD436047
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|67015783|gb|CO444532.1|CO444532
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|31362206|gb|CD446563.1|CD446563
EST:     GAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: GAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|67016494|gb|CO445243.1|CO445243
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|67015750|gb|CO444499.1|CO444499
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|60355296|gb|DN222269.1|DN222269
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|67023954|gb|CO452703.1|CO452703
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|21843176|gb|BQ703742.1|BQ703742
EST:     AAGATGCCACGAATGTTGG-GACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|31349581|gb|CD433938.1|CD433938
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAAGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|14204206|gb|BG837883.1|BG837883
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTSGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|211301118|gb|FL169206.1|FL169206
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|84980804|gb|DW531153.1|DW531153
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|31350995|gb|CD435352.1|CD435352
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|32864127|gb|CF003809.1|CF003809
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|211377301|gb|FL186754.1|FL186754
EST:     AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGA
EST: gi|67038520|gb|CO464838.1|CO464838
EST:     AAGATGCCACGAATGTTGGTGACGAAAGTGTTTTTGCTC-GAACATCCAG                         GAGAACAAGGAAGGACTTGAGCTCTTGAAAAACTGCA-TTGAGAAGGCTGG
genomic: AAGATGCCACGAATGTTGGTGACGAAGGTGGTTTTGCTCCGAACATCCAGgttagtttct ... ctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAA-CTGCAATTGAGAAGGCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgaaaacgatgttttgttatgagagttaatctgtttcaatttcctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG
                                           tcctgat  putative branch site (score: 3)
                                         tttcct  CT-rich tract
             ttttgttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagtttctgatttcacagttggggacatctgtttttttatttgtttcactttactggaacattggtctttatgtaggtaaaactgaaaacgatgttttgttatgagagttaatctgtttcaatttcctgatactagGAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA