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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgtttgttagttactctattgatggtgtggttagtctttatgtccatgcattttgttctgccaacatttataagaagagaactggaaacatataccactccctttttttttgcaattgctactgcagtgctaacctttgcctctattttcatatgcatcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCAAACAACGCCATTCTTACAGCTTCCTAGCCCTGAGCCGTACTCAATCTTG

Basic information

species Zea mays
transcript GRMZM2G047867_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047867_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os06g33710.2 (Oryza sativa), 3'ss of exon 10
gtgagtt---gtttgttagttactctattgatggtgtggttagtctttatgtccatgcattttgttctgccaacatttataagaagagaactggaaacatataccactccctttttttttgcaattgctactgcagtgctaacctttgcctctattttcatatgcatcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCAAACAACGCCATTCTTACAGCTTCCTAGCCCTGAGCCGTACTCAATCTTG
||    |   |||  ||| ||   | |||     | |  | ||   |||| ||  | | ||   |         || |||    |    | || ||  || | ||| ||   ||| || |  ||||| || | || || | | ||      ||   || ||| |  ||||  | ||     | |      |   || ||  |      | || | |  |    ||| ||||  |   |  |  |                               
gttcactaacgttatttaattctgccattctc--tttcataagctcttat-tctgtactttccctcaaatatgtatctattttcaccctaatgcaag-attt-ccattcaactttgttgtttaattgttagt-cattgatgaactg-----cttgcttaatagGT-TCAT--CGGG-----CTGCTTTTGTTC-TGCCAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAG----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71333305|gb|DR803709.1|DR803709
EST:     TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTTTGCTGAAAAC                         GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: gi|18177971|gb|BM379181.1|BM379181
EST:     TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAAC                         GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: gi|5871424|gb|AW017895.1|AW017895
EST:     TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAAC                         GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: gi|60345911|gb|DN212884.1|DN212884
EST:     TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAAC                         GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: gi|5740451|gb|AI948141.1|AI948141
EST:     TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAAC                         GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: gi|37385273|gb|CF629769.1|CF629769
EST:     TAAGAAGAGAACTGGAAGCATATACCACTCCTAGTACCTCTGCTGAAAAC                         GAGAAACCGAAAGAATCGGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: gi|88757916|gb|DY542057.1|DY542057
EST:     TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAAC                         GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: gi|93014144|gb|EB639664.1|EB639664
EST:     TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGGTGAAAAC                         GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: gi|60350962|gb|DN217935.1|DN217935
EST:     TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAAC                         GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: gi|88757915|gb|DY542056.1|DY542056
EST:     TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTTTGCTGAAAAC                         GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
EST: gi|71757236|gb|DR955173.1|DR955173
EST:     TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAAC                         GAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA
genomic: TAAGAAGAGAACTGGAAGCATATACCACTCCTATTAGTTCTGCTGAAAACgtgagttgtt ... atcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaattgctactgcagtgctaacctttgcctctattttcatatgcatcatgacagGAGAAACCGAAAGAATCAGTGTCAGAACCGCAGAAGATAAAGATATTGTCAAACAACGCCATTCTTACAGCTTCCTAGCCCTGAGCCGTACTCAATCTTG
                tgctaac  putative branch site (score: 1)
                                tattttcatat  TA-rich tract