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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggttctatccttcgcttctcgttctctttcgccctccctccatccaaaaactgttctctccttttttttttttttgtagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT

Basic information

species Zea mays
transcript GRMZM2G044629_T03
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044629_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os04g52370.2 (Oryza sativa), 3'ss of exon 11
gtatggttctatccttcgcttctcgttctctttcgccctccctccatccaaaaactgtt-----ctctccttttttttttttttgtagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT
||||| |||||||||| | |||||  || ||   |    | ||   ||   |      |     |      || || | |   || |||| ||| |||| ||||||||| |||| || ||||| ||||| ||||||||||||||||||||||||  
gtatg-ttctatcctttgtttctcaatccctcctggttgcactttctcttgaggtgtataacaaccgcatgttcttatctcactgcagATTTGCTTGCATATGTTCACTTTGGATTTTTTGAATCAAGTAGCAAACAGCCTTGAGAAGGACAGTAC

upper sequence: GRMZM2G044629_T01 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA08G09170.2 (Glycine max), 3'ss of exon 12
---------------gtatg-gttctatccttcgcttctcgttctctttcgccctccctccatccaaaaact-gttctctccttttttttttttttgtagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT
                | ||   | ||   || | || |  || |   | ||      |  |   |    |  | | |||  ||    || |  ||  || ||||| | ||||||||||||||||| ||  ||||||||||||||||  ||||||| || |||||  |
acagatcatgaaaatatttgtactttagagtttgattgttatttttactggctgagttttaagttatcttcaagatttctgattaaccttgtgatttcagGTCTGCTTACACATGTTCACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCAT

upper sequence: GRMZM2G044629_T01 (Zea mays), 3'ss of exon 11
lower sequence: Vv01s0011g01420.t01 (Vitis vinifera), 3'ss of exon 11
----------gtatggttctatccttcgcttctcgttctctttcgccctccctccatccaaaaactgttctctcct-------tttttttttttttgtagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT
           |   ||  |||       |     |  | ||  |       |   |  |     |||| |||  |       || ||| |  |||  || | ||| | || ||||| |||||||| ||  ||||||||||||||||  |||||||||| |||||  |
gcctttcaattttcagtgttatttaatattcaaaatggtattaaggatgatttgattatatgctttgttttcttttcaatagtttgtttctgcttttcagGTGTGCTTACATATGTTTACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149100895|gb|EE186990.2|EE186990
EST:     AGGGCGACTCCGTTACTGTTGGAGCAAC                         ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGC
genomic: AGGGCGACTCCGTTACTGTTGGAGCAACgtatggttct ... ttttttgtagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGC
EST: gi|211094109|gb|FL460556.1|FL460556
EST:     GACAGGGCGACTTCGTTACTGTTGGAGCAAC                         ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGC
genomic: GACAGGGCGACTCCGTTACTGTTGGAGCAACgtatggttct ... ttttttgtagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGC
EST: gi|37378055|gb|CF625683.1|CF625683
EST:     CTACCGAAATGAATCAGTCGACAGGGCGACTCCGTTACTGTTGGAGCAAC                         ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGC
genomic: CTACCGAAATGAATCAGTCGACAGGGCGACTCCGTTACTGTTGGAGCAACgtatggttct ... ttttttgtagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGC
EST: gi|211406602|gb|FL094198.1|FL094198
EST:     CTACCGAAATGAATCAGTCGACAGGGCGACTCCGTTACTGTTGGAGCAAC                         ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGC
genomic: CTACCGAAATGAATCAGTCGACAGGGCGACTCCGTTACTGTTGGAGCAACgtatggttct ... ttttttgtagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGC
EST: gi|94477176|gb|EB706134.1|EB706134
EST:     AAATGAATCAGTCGACAGGGCGACTCCGTTACTGTTGGAGCAAC                         ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGC
genomic: AAATGAATCAGTCGACAGGGCGACTCCGTTACTGTTGGAGCAACgtatggttct ... ttttttgtagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGC
EST: gi|91052248|gb|EB162666.1|EB162666
EST:     CTACCGAAATGAATCAGTCGACAGGGCGACTCCGTTACTGTTGGAGCAAC                         ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGC
genomic: CTACCGAAATGAATCAGTCGACAGGGCGACTCCGTTACTGTTGGAGCAACgtatggttct ... ttttttgtagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGC
EST: gi|24769018|gb|CA404147.1|CA404147
EST:     CTACCAAAATGAATCAGTCGACAGGGCGACTCCGTTACTGTTGGAGCAAC                         ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGC
genomic: CTACCGAAATGAATCAGTCGACAGGGCGACTCCGTTACTGTTGGAGCAACgtatggttct ... ttttttgtagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGC
EST: gi|32863501|gb|CF003183.1|CF003183
EST:     CTACCGAAATGAATCAGTCGACAGGGCGACTCCGTTACTGTTGGAGCAAC                         ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGC
genomic: CTACCGAAATGAATCAGTCGACAGGGCGACTCCGTTACTGTTGGAGCAACgtatggttct ... ttttttgtagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGC
EST: gi|16926697|gb|BM079765.1|BM079765
EST:     CTACCGAAATGAATCAGTCGACAGGGCGACTCCGTTACTGTTGGAGCAAC                         ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGC
genomic: CTACCGAAATGAATCAGTCGACAGGGCGACTCCGTTACTGTTGGAGCAACgtatggttct ... ttttttgtagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttcgccctccctccatccaaaaactgttctctccttttttttttttttgtagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT
                          ctgttctctccttttt  CT-rich tract
                                     ttttttttttttttgt  TA-rich tract