1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgtgttctgttactcaggtttatatttgtctagtttctccttgtttctgccatccctgtaatattaatactatgattgttttggcggggtttattgcagCCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCCTGTCTGTGGTATGGAGAAGTGAAACAG
species | Zea mays |
transcript | GRMZM2G044348_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCGCAG CCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCCEST: gi|166524226|gb|EG099008.1|EG099008
genomic: TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAGgtgtgttctg ... tttattgcagCCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
EST: TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCGCAG CCTGCTCTACTATACCTTGTTCCTGGTGTGATEST: gi|5688693|gb|AI941708.1|AI941708
genomic: TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAGgtgtgttctg ... tttattgcagCCTGCTCTACTATACCTTGTTCCTGGTGTGAT
EST: TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCGCAG CCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCCEST: gi|166684693|gb|EG101593.1|EG101593
genomic: TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAGgtgtgttctg ... tttattgcagCCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
EST: GTTTCAAGCGGCGCAG CCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCCEST: gi|194716887|gb|FK934046.1|FK934046
genomic: GTTTCAAGCGGCACAGgtgtgttctg ... tttattgcagCCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
EST: TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAG CCTGCTCTACTATACCTTGTTNCCTGGTGTGATTGGTTTTGTCGCTGTTCC
genomic: TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAGgtgtgttctg ... tttattgcagCCTGCTCTACTATACCTTGTT-CCTGGTGTGATTGGTTTTGTCGCTGTTCC
ttctgccatccctgtaatattaatactatgattgttttggcggggtttattgcagCCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCCTGTCTGTGGTATGGAGAAGTGAAACAG
tattaat putative branch site (score: 2)
taatattaatactatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgttctgttactcaggtttatatttgtctagtttctccttgtttctgccatccctgtaatattaatactatgattgttttggcggggtttattgcagCCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCCTGTCTGTGGTATGGAGAAGTGAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT