1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tactccattagttagatttcaattcctcaaaatcaagggaaacaaacgggccctaaggttttttggaatattttatcaacattgcaatttcacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGAGAGTAATTCTGCTAAAACAATTGCTGAGAAGAGCACATGAGGACTTTCG
species | Zea mays |
transcript | GRMZM2G043983_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAG ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGAEST: gi|32911846|gb|CF016658.1|CF016658
genomic: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAGgtaagcatgg ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGA
EST: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAG ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGAEST: gi|149065576|gb|EE286698.2|EE286698
genomic: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAGgtaagcatgg ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGA
EST: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTTTCTGCTGAG ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGAEST: gi|6012583|gb|AW062020.1|AW062020
genomic: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAGgtaagcatgg ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGA
EST: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAG ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGAEST: gi|4967208|gb|AI691895.1|AI691895
genomic: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAGgtaagcatgg ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGA
EST: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAG ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGAEST: gi|76280767|gb|DV020335.1|DV020335
genomic: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAGgtaagcatgg ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGA
EST: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAG ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGAEST: gi|113702734|gb|EE680238.1|EE680238
genomic: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAGgtaagcatgg ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGA
EST: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAG ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGAEST: gi|4804418|gb|AI665217.2|AI665217
genomic: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAGgtaagcatgg ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGA
EST: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAG ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGAEST: gi|32867645|gb|CF007327.1|CF007327
genomic: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAGgtaagcatgg ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGA
EST: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAG ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGAEST: gi|78025625|gb|DV494012.1|DV494012
genomic: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAGgtaagcatgg ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGA
EST: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAG ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGAEST: gi|76016907|gb|DT944077.1|DT944077
genomic: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAGgtaagcatgg ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGA
EST: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAG ATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGA
genomic: ATCTGGAGGAGAGGTTGAACATGGGTGTCAACTTTCTTCTATCTGCTGAGgtaagcatgg ... cacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGA
acgggccctaaggttttttggaatattttatcaacattgcaatttcacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGAGAGTAATTCTGCTAAAACAATTGCTGAGAAGAGCACATGAGGACTTTCG
ttttttggaatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactccattagttagatttcaattcctcaaaatcaagggaaacaaacgggccctaaggttttttggaatattttatcaacattgcaatttcacgttgcagATTGACCATTGTAAGAAGAACTACAAGTTTGGTTTCGGAATGACCGTAGGAGAGTAATTCTGCTAAAACAATTGCTGAGAAGAGCACATGAGGACTTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - -caaaatca
- - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattgca