1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacttttcctatgcataatataggtctgatatactctttagatgttacttggtatcaaaacaaaaatggaataatgattggtaatgctatttattctagatctattttatttgggtcactgatggatatcatgtaatacaacagAGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAGGAATAAGAGTACTCCCCCCTTCATTTGGCACTGATTCTGCCTGGTTTGG
species | Zea mays |
transcript | GRMZM2G043862_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAG AGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAGEST: gi|26457476|gb|CA829059.1|CA829059
genomic: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAGgtacttttcc ... aatacaacagAGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAG
EST: CAAGACGGTCATTTTAGCTGG-GGTTCGTCG-GCTTGCCTGGTTTACCAG AGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAGEST: gi|211216600|gb|FL362617.1|FL362617
genomic: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAGgtacttttcc ... aatacaacagAGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAG
EST: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAG AGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAGEST: gi|78180885|gb|DV551258.1|DV551258
genomic: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAGgtacttttcc ... aatacaacagAGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAG
EST: ACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAG AGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAGEST: gi|7844623|gb|AW787845.1|AW787845
genomic: ACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAGgtacttttcc ... aatacaacagAGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAG
EST: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAG AGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAGEST: gi|211049730|gb|FL339082.1|FL339082
genomic: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAGgtacttttcc ... aatacaacagAGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAG
EST: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAG AGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAGEST: gi|149100035|gb|EE186087.2|EE186087
genomic: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAGgtacttttcc ... aatacaacagAGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAG
EST: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAG AGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCCCCTTATATGTCAGAAGEST: gi|113701275|gb|EE678779.1|EE678779
genomic: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAGgtacttttcc ... aatacaacagAGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAG
EST: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAG AGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAGEST: gi|78544483|gb|DV621981.1|DV621981
genomic: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAGgtacttttcc ... aatacaacagAGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAG
EST: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAG AGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAGEST: gi|6918321|gb|AW399851.1|AW399851
genomic: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAGgtacttttcc ... aatacaacagAGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAG
EST: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAG AGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAGEST: gi|40303469|gb|CK347856.1|CK347856
genomic: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAGgtacttttcc ... aatacaacagAGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAG
EST: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAG AGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAGEST: gi|110532724|gb|EE036904.1|EE036904
genomic: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAGgtacttttcc ... aatacaacagAGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAG
EST: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTTCCAG AGAGGCTGGAGAAAGAGCTTCACCAACTTTTTCCTCCTTATATGTCAGAAGEST: gi|110515665|gb|EE020253.1|EE020253
genomic: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAGgtacttttcc ... aatacaacagAGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAG
EST: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAG AGAGGCTGGGGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAG
genomic: CAAGACGGTCATTTTAGCTGGTGGTTCGTCGTGCTTGCCTGGTTTACCAGgtacttttcc ... aatacaacagAGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAG
tttattctagatctattttatttgggtcactgatggatatcatgtaatacaacagAGAGGCTGGAGAAAGAGCTTCACCAACTTCTTCCACCTTATATGTCAGAAGGAATAAGAGTACTCCCCCCTTCATTTGGCACTGATTCTGCCTGGTTTGG
cactgat putative branch site (score: 71)
tagatctattttattt TA-rich tract