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...tctaatgtgcgccacactttacaaggctcgaatatgttcgtccgttggtcgttaagctaatgagatactaatagcttgctcgtttggcaatttttttcagGCTGAGCTAGCAGAATGTTTGGAAAGAGACGGTTTCAAATCTGTGCAGGAAGCAGTCGGCGCTGATTTCCGATGATCCCTGGCGGATCGCTGAGAAGGTC
species | Zea mays |
transcript | GRMZM2G043776_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTTATACTGCTCTTGCATATGGTGGTCCAGCTCTTATACCCAGAATAAAG GCTGAGCTAGCAGAATGTTTGGAAAGAGACGGTTTCAAATCTGTGCAGGAAEST: gi|32799213|gb|CD951449.1|CD951449
genomic: TTTATACTGCTCTTGCATATGGTGGTCCAGCTCTTATACCCAGAATAAAGgttagtatac ... tttttttcagGCTGAGCTAGCAGAATGTTTGGAAAGAGACGGTTTCAAATCTGTGCAGGAA
EST: TTTATACTGCTCTTGCATATGGTGGTCCAGCTCTTATACCCAGAATAAAG GCTGAGCTAGCAGAATGTTTGGAAAGAGACGGTTTCAAATCTGTGCAGGAAEST: gi|32796523|gb|CD948759.1|CD948759
genomic: TTTATACTGCTCTTGCATATGGTGGTCCAGCTCTTATACCCAGAATAAAGgttagtatac ... tttttttcagGCTGAGCTAGCAGAATGTTTGGAAAGAGACGGTTTCAAATCTGTGCAGGAA
EST: TTTATACTGCTCTTGCATATGGTGGTCCAGCTCTTATACCCAGAATAAAG GCTGAGCTAGCAGAATGTTTGGAAAGAGACGGTTTCAAATCTGTGCAGGAAEST: gi|18177542|gb|BM378752.1|BM378752
genomic: TTTATACTGCTCTTGCATATGGTGGTCCAGCTCTTATACCCAGAATAAAGgttagtatac ... tttttttcagGCTGAGCTAGCAGAATGTTTGGAAAGAGACGGTTTCAAATCTGTGCAGGAA
EST: TTTATACTGCTCTTGCATATGGTGGTCCAGCTCTTATACCCAGAATAAAG GCTGAGCTAGCAGAATGTTTGGAAAGAGACGGTTTCAAATCTGTGCAGGAA
genomic: TTTATACTGCTCTTGCATATGGTGGTCCAGCTCTTATACCCAGAATAAAGgttagtatac ... tttttttcagGCTGAGCTAGCAGAATGTTTGGAAAGAGACGGTTTCAAATCTGTGCAGGAA
tggtcgttaagctaatgagatactaatagcttgctcgtttggcaatttttttcagGCTGAGCTAGCAGAATGTTTGGAAAGAGACGGTTTCAAATCTGTGCAGGAAGCAGTCGGCGCTGATTTCCGATGATCCCTGGCGGATCGCTGAGAAGGTC
tactaat putative branch site (score: 27)
tttttttc putative PPT
aatttttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaatgtgcgccacactttacaaggctcgaatatgttcgtccgttggtcgttaagctaatgagatactaatagcttgctcgtttggcaatttttttcagGCTGAGCTAGCAGAATGTTTGGAAAGAGACGGTTTCAAATCTGTGCAGGAAGCAGTCGGCGCTGATTTCCGATGATCCCTGGCGGATCGCTGAGAAGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- -aatgtgc
- - - - - -ccacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gctaatg