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...tgtaactttattctattgcgattttcacaaaaagaaaacaagaaaccgaattctctagttggtgattctggttgcattctcatgttttgttatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
species | Zea mays |
transcript | GRMZM2G043198_T03 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAC GCCGCTGATATACTGGCCAAGEST: gi|211087670|gb|FL396337.1|FL396337
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|211325794|gb|FL399616.1|FL399616
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|6056687|gb|AW091092.1|AW091092
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|60352148|gb|DN219121.1|DN219121
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|32801932|gb|CD954168.1|CD954168
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCAGATAAACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|148928998|gb|EC874173.2|EC874173
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCCCTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|32788226|gb|CD940462.1|CD940462
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|76282095|gb|DV021663.1|DV021663
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|67038743|gb|CO464998.1|CO464998
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|211454584|gb|FL410342.1|FL410342
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATEST: gi|60396979|gb|DN229798.1|DN229798
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATAT
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|463331|gb|T18298.1|T18298
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTNAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|32801690|gb|CD953926.1|CD953926
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|6031329|gb|AW076186.1|AW076186
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|32802072|gb|CD954308.1|CD954308
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|60672217|gb|DN474985.1|DN474985
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGNTGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|31354921|gb|CD439278.1|CD439278
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCEST: gi|14206753|gb|BG840431.1|BG840431
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGC
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|211231538|gb|FL370980.1|FL370980
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|211275651|gb|FL423569.1|FL423569
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAREST: gi|211126332|gb|FL371833.1|FL371833
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTTGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|6828052|gb|AW331695.1|AW331695
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCNCTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|60340970|gb|DN207943.1|DN207943
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|5566870|gb|AI881781.1|AI881781
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|44900498|gb|CK827043.1|CK827043
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
ccgaattctctagttggtgattctggttgcattctcatgttttgttatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
ttttgttatttttc CT-rich tract
atgttttgttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaactttattctattgcgattttcacaaaaagaaaacaagaaaccgaattctctagttggtgattctggttgcattctcatgttttgttatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - ctattgc
- - - - - - - - - - - - tcacaaa
- - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - caagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg