1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...acaggagcatcccaagatcttttgatcctatgtttagaggggcaatagataactgagacatccttgcattaactataacccctctcgtttacttttgcagAGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGG
species | Zea mays |
transcript | GRMZM2G041181_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGC AGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGGEST: gi|32906331|gb|CF011144.1|CF011144
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGCgtaagtttct ... acttttgcagAGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGG
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGC AGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGGATEST: gi|149103005|gb|EE288366.2|EE288366
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGCgtaagtttct ... acttttgcagAGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGGAT
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGC AGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGGEST: gi|74239804|gb|DT647718.1|DT647718
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGCgtaagtttct ... acttttgcagAGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGG
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGC AGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGGEST: gi|76018526|gb|DT945696.1|DT945696
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGCgtaagtttct ... acttttgcagAGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGG
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGC AGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGGEST: gi|29543932|gb|CB604312.1|CB604312
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGCgtaagtttct ... acttttgcagAGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGG
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGC AGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGGEST: gi|78023022|gb|DV491409.1|DV491409
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGCgtaagtttct ... acttttgcagAGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGG
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGC AGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGGEST: gi|67033086|gb|CO461835.1|CO461835
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGCgtaagtttct ... acttttgcagAGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGG
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGC AGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGGEST: gi|94472178|gb|EB701136.1|EB701136
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGCgtaagtttct ... acttttgcagAGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGG
EST: TATTTTCTGCTGTGGCTCCTCCCTGT-GTATTTGAAGGAAAATCATTGGC AGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGGEST: gi|110944605|gb|EE164762.1|EE164762
genomic: TATTTTCTGCTGTGGCTCCTCC-TGTTGTATTTGAAGGAAAATCATTGGCgtaagtttct ... acttttgcagAGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGG
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGC AGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGGEST: gi|166654883|gb|EG281590.1|EG281590
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGCgtaagtttct ... acttttgcagAGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGG
EST: TTTGAAGGAAAATCATTGGC AGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGGEST: gi|50325032|gb|CO520158.1|CO520158
genomic: TTTGAAGGAAAATCATTGGCgtaagtttct ... acttttgcagAGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGG
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGC AGGAATTTTGCCAGC
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTGAAGGAAAATCATTGGCgtaagtttct ... acttttgcagAGGAATTTTGCCAGC
tagataactgagacatccttgcattaactataacccctctcgtttacttttgcagAGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGG
cccctctcgtttactt CT-rich tract
attaactataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaggagcatcccaagatcttttgatcctatgtttagaggggcaatagataactgagacatccttgcattaactataacccctctcgtttacttttgcagAGGAATTTTGCCAGCAATTGATCTTATTAGCGTGAATGCTTTGGTTGGG
-caggagc
- - - - - - - - - - - tgatcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccttgc