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...atcctcggtgtacctcgtgtgcttgtagctgatgtcacaatctatttcctgattcctgagtaaactaggtttgtttaactcattctgccataactatcagCAAGTCAGCTCTTGGCACACAAATGTCTGGTGAAGAGCAGAGGCGTCTGAAGGAGGACTTAAACTCTCTTGGGATGGATGATATATCTTCATTTATGGAA
species | Zea mays |
transcript | GRMZM2G040720_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAATATGCGAAGTACTTTCCTGTAATATTCACAGGGAGAACTATAGAAAG CAAGTCAGCTCTTGGCACACAAATGTCTGGTGAAGAGCAGAGGCGTCTGAAEST: gi|37381459|gb|CF627617.1|CF627617
genomic: AAATATGCGAAGTACTTTCCTGTAATATTCACAGGGAGAACTATAGAAAGgtataccatg ... taactatcagCAAGTCAGCTCTTGGCACACAAATGTCTGGTGAAGAGCAGAGGCGTCTGAA
EST: AACTATAGAAAG CAAGTCAGCTCTTGGCACACAAATGTCTGGTGAAGAGCAGAGGCGTCTGAAEST: gi|9824900|gb|BE574997.1|BE574997
genomic: AACTATAGAAAGgtataccatg ... taactatcagCAAGTCAGCTCTTGGCACACAAATGTCTGGTGAAGAGCAGAGGCGTCTGAA
EST: AAATATGCGAAGTACTTTCCTGTAATATTCACAGGGAGAACTATAGAAAG CAAGTCAGCTCTTGGCACACAAATGTCTGGTGAAGAGCAGAGGCGTCTGAAEST: gi|60341736|gb|DN208709.1|DN208709
genomic: AAATATGCGAAGTACTTTCCTGTAATATTCACAGGGAGAACTATAGAAAGgtataccatg ... taactatcagCAAGTCAGCTCTTGGCACACAAATGTCTGGTGAAGAGCAGAGGCGTCTGAA
EST: AAATATGCGAAGTACTTTCCTGTAATATTCACAGGGAGAACTATAGAAAG CAAGTCAGCTCTTGGCACACAAATGTCTGGTGAAGAGCAGAGGCGTCTGAAEST: gi|60344633|gb|DN211606.1|DN211606
genomic: AAATATGCGAAGTACTTTCCTGTAATATTCACAGGGAGAACTATAGAAAGgtataccatg ... taactatcagCAAGTCAGCTCTTGGCACACAAATGTCTGGTGAAGAGCAGAGGCGTCTGAA
EST: AAATATGCGAAGTACTTTCCTGTAATATTCACAGGGAGAACTATAGAAAG CAAGTCAGCTCTTGGCACACAAATGTCTGGTGAAGAGCAGAGGCGTCTGAAEST: gi|86474242|gb|DY240612.1|DY240612
genomic: AAATATGCGAAGTACTTTCCTGTAATATTCACAGGGAGAACTATAGAAAGgtataccatg ... taactatcagCAAGTCAGCTCTTGGCACACAAATGTCTGGTGAAGAGCAGAGGCGTCTGAA
EST: AAATATGCGAAGTACTTTCCTGTAATATTCACAGGGAGAACTATAGAAAG CAAGTCAGCTCTTGGCACACAAATGTCTGGTGAAGAGCAGAGGCGTCTGAA
genomic: AAATATGCGAAGTACTTTCCTGTAATATTCACAGGGAGAACTATAGAAAGgtataccatg ... taactatcagCAAGTCAGCTCTTGGCACACAAATGTCTGGTGAAGAGCAGAGGCGTCTGAA
ttcctgattcctgagtaaactaggtttgtttaactcattctgccataactatcagCAAGTCAGCTCTTGGCACACAAATGTCTGGTGAAGAGCAGAGGCGTCTGAAGGAGGACTTAAACTCTCTTGGGATGGATGATATATCTTCATTTATGGAA
ccataac putative branch site (score: 3)
tttgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcctcggtgtacctcgtgtgcttgtagctgatgtcacaatctatttcctgattcctgagtaaactaggtttgtttaactcattctgccataactatcagCAAGTCAGCTCTTGGCACACAAATGTCTGGTGAAGAGCAGAGGCGTCTGAAGGAGGACTTAAACTCTCTTGGGATGGATGATATATCTTCATTTATGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA