1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tacaccgctgcaagctggcctaaaatgtcataaccccacaacagaaagatattgtttttttttccccaaaataacattggattctattctatgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTAACACGAAGCAGCATTCTTGGATAGATCCTTCTCCGTTCCACCATTTGTT
species | Zea mays |
transcript | GRMZM2G039325_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAG GAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTAEST: gi|16378770|gb|BI992594.1|BI992594
genomic: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAGgtacattttt ... atgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTA
EST: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAG GAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTAEST: gi|14202547|gb|BG836224.1|BG836224
genomic: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAGgtacattttt ... atgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTA
EST: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAG GAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTAEST: gi|211352090|gb|FL449510.1|FL449510
genomic: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAGgtacattttt ... atgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTA
EST: AGCTGCTTGGT-CGAAAAGGCTCTGGTAGTTCACAACTGCTTCCTGAAAG GAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTAEST: gi|6012204|gb|AW061746.1|AW061746
genomic: AGCTGCTTGGTACG-AAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAGgtacattttt ... atgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTA
EST: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAG GAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTAEST: gi|60338105|gb|DN205078.1|DN205078
genomic: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAGgtacattttt ... atgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTA
EST: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAG GAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTAEST: gi|5713754|gb|AI943746.1|AI943746
genomic: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAGgtacattttt ... atgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTA
EST: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCGCAACTGCTTCCTGGAAG GAACGCAGCCCGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTAEST: gi|29945923|gb|CB815888.1|CB815888
genomic: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAGgtacattttt ... atgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTA
EST: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAG GAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTAEST: gi|71760015|gb|DR957952.1|DR957952
genomic: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAGgtacattttt ... atgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTA
EST: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAG GAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTAEST: gi|14646151|gb|BI180340.1|BI180340
genomic: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAGgtacattttt ... atgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTA
EST: CTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAG GAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTAEST: gi|14585543|gb|BI135295.1|BI135295
genomic: CTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAGgtacattttt ... atgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTA
EST: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAG GAACGCAGCCCGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTAEST: gi|211530545|gb|FL066727.1|FL066727
genomic: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAGgtacattttt ... atgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTA
EST: -GCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCCTTCCTGGAAG GAACGCAGCACGAACTGGGTCGATGCCCAACEST: gi|14202541|gb|BG836218.1|BG836218
genomic: AGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGC-TTCCTGGAAGgtacattttt ... atgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAAC
EST: AGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTCGGAAG GAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTEST: gi|5058732|gb|AI737208.1|AI737208
genomic: AGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCT-GGAAGgtacattttt ... atgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACT
EST: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAG GAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTAEST: gi|12969360|gb|BG266304.1|BG266304
genomic: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAGgtacattttt ... atgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTA
EST: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAG GAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTAEST: gi|78024888|gb|DV493275.1|DV493275
genomic: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAGgtacattttt ... atgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTA
EST: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAG GAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTAEST: gi|78024574|gb|DV492961.1|DV492961
genomic: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAGgtacattttt ... atgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTA
EST: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAG GAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTAEST: gi|148967768|gb|EE019045.2|EE019045
genomic: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAGgtacattttt ... atgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTA
EST: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAG GAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTA
genomic: AAGCTGCTTGGTACGAAAGGCTCTGGTAGTTCACAACTGCTTCCTGGAAGgtacattttt ... atgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTA
aagatattgtttttttttccccaaaataacattggattctattctatgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTAACACGAAGCAGCATTCTTGGATAGATCCTTCTCCGTTCCACCATTTGTT
aaataac putative branch site (score: 139)
attgttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaccgctgcaagctggcctaaaatgtcataaccccacaacagaaagatattgtttttttttccccaaaataacattggattctattctatgcctgcagGAACGCAGCACGAACTGGGTCGATGCGCAACTTCCAGTGATGGCAGCACTAACACGAAGCAGCATTCTTGGATAGATCCTTCTCCGTTCCACCATTTGTT
- - ccgctgc
- - - - - - agctggc
- - - - - - - - - - - - - - - - - -ccacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa