1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgatatttatactcaactagcgatattaatgttctgattatatctgttgtgttagtgatatatatcttaccttattgacaaattgtgattaaaataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATG
species | Zea mays |
transcript | GRMZM2G038848_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGAAATCGCTGAGGGTATCCATGCTTATGGGATACCAAGCCATCGGCATG TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTAEST: gi|110202395|gb|EC884292.1|EC884292
genomic: TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: GGATAACAAGCCATCGGGCATG TGCCTGAGATTGAGCAAGGGCTTACAGATGCTGGGGAATCAAAAGTTACTEST: gi|71762552|gb|DR960489.1|DR960489
genomic: GGATAACAAGCCATC-GGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACT
EST: TGGGATAACAAGCCATCGGCATG TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTAEST: gi|148958090|gb|EC904281.2|EC904281
genomic: TGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: GGTATCCATGCTTATGGGATAACAAGCCATCGGCATG TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTAEST: gi|74234670|gb|DT642584.1|DT642584
genomic: GGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATG TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTAEST: gi|87155331|gb|DY400120.1|DY400120
genomic: TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATG TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTAEST: gi|26558690|gb|CA830925.1|CA830925
genomic: TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATG TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTAEST: gi|33093061|gb|CF053055.1|CF053055
genomic: TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: GAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATG TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTAEST: gi|32931562|gb|CF036374.1|CF036374
genomic: GAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: GAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATG TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTAEST: gi|78080159|gb|DV508571.1|DV508571
genomic: GAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: CAAGCCATCGGCATG TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTAEST: gi|22473066|gb|BU037546.1|BU037546
genomic: CAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGG-ATG TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTAEST: gi|67010559|gb|CO439308.1|CO439308
genomic: TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
EST: TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATG TGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
genomic: TGAAATCGCTGAGGGTATCCATGCTTATGGGATAACAAGCCATCGGCATGgtgatattta ... ataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTA
gtgttagtgatatatatcttaccttattgacaaattgtgattaaaataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATG
tattgac putative branch site (score: 2)
ttattgacaaattgtg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatatttatactcaactagcgatattaatgttctgattatatctgttgtgttagtgatatatatcttaccttattgacaaattgtgattaaaataatgacagTGCCTGAGATTGAGCAAGGACTTACAGATGCTGCTGAATCAAAAGTTACTATCAGCTTTACTCCACATTTGATGTGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT