Sequence
atgc intronic sequence ATGC exonic sequencegtaggtttcaatacacatgttgactcaacattatggtattcttctggaacgcctgtcagcctgcaacaatgtttgtagGGAGATACCAAGAGTTTCCTTGTTTGCAAGAAGAAAATGGCTACTTCTCCGGAGATGCTTTGTTGTTATTGTCCAGCTCCATTCAAACAGTTTCTTGAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G037923_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os07g07560.2 (Oryza sativa), 3'ss of exon 10
gtaggtttcaatacacatgttgactcaacattatggtattc--ttctggaacgcctgtcagcctgcaac-----aatgtttgtagGGAGATACCAAGAGTTTCCTTGTTTGCAAGAAGAAAATGGCTACTTCTCCGGAGATGCTTTGTTGTTATTGTCCAGCTCCATTCAAACAGTTTCTTGAGA
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gtatattttaatatgcctattaacttcatgataccaacttcagttcagattagccaattctaatgttgcttgcttaattatgcagGGTGATACCAAGAGTTTCCTTGTTTGCAAGAAGAAAATGGCTACTTCTCCGGAGATGCTAAGCTGTTTCTGTCCACCTCCATTCAAACAGTTTCTTGAAG
upper sequence: GRMZM2G037923_T02 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA16G04580.1 (Glycine max), 3'ss of exon 10
---------------------------------------------gtaggtttcaatacacatgttgactcaacattatggtattcttctggaacgcctgtcagcctgcaacaatgtttgtagGGAGATACCAAGAGTTTCCTTGTTTGCAAGAAGAAAATGGCTACTTCTCCGGAGATGCTTTGTTGTTATTGTCCAGCTCCATTCAAACAGTTTCTTGAGA
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gtatttttgtagcatcttgttttatattgattccttttttttttaacaggttttatagtgattcttgcttcttagaaatttttttttatgacaatttctcccttcttttggccatatctacagGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAGAAAATGGCCACTTCCCCGGAGTTGATGTGCTGCTTTGTTCCTGCTCCATTTAAGCAGTTTCTTGAAG
upper sequence: GRMZM2G037923_T02 (Zea mays), 3'ss of exon 10
lower sequence: Vv08s0007g07420.t01 (Vitis vinifera), 3'ss of exon 10
gtaggttt-caatacacatgt---tgactca---acattatggta--ttcttctggaacgcctgtcagcctgcaacaatgtttgtagGGAGATACCAAGAGTTTCCTTGTTTGCAAGAAGAAAATGGCTACTTCTCCGGAGATGCTTTGTTGTTATTGTCCAGCTCCATTCAAACAGTTTCTTGAGA
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gtgagtttatattgtttgtgtctttgatccattcaggctgaggaaacttcatctgattttagttttttctcatttggaatattacagGGAGACAACAAGAGTTTCCTTGTTTGTAAGAAAAAGATGGCTACTTCACCAGAGTTGATGTGTTGCTTTTGTCCTGCTCCATTCAAACAGTTCCTTGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcaacattatggtattcttctggaacgcctgtcagcctgcaacaatgtttgtagGGAGATACCAAGAGTTTCCTTGTTTGCAAGAAGAAAATGGCTACTTCTCCGGAGATGCTTTGTTGTTATTGTCCAGCTCCATTCAAACAGTTTCTTGAGA
tattctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaggtttcaatacacatgttgactcaacattatggtattcttctggaacgcctgtcagcctgcaacaatgtttgtagGGAGATACCAAGAGTTTCCTTGTTTGCAAGAAGAAAATGGCTACTTCTCCGGAGATGCTTTGTTGTTATTGTCCAGCTCCATTCAAACAGTTTCTTGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC