1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagtctttaacttagcaacatcttaacttcttatgttctcttgaaacagttgttatgttccttacatgatattggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTGGCTTACAATAAG
species | Zea mays |
transcript | GRMZM2G037342_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAAATTTGACCNNNNNNNCTCCAAATGGAAAGATATCTTTTAGGCAGCAG GTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTGEST: gi|110481107|gb|EE010953.1|EE010953
genomic: CAAATTTGACCAAAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtcttt ... ggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
EST: AAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAG GTTATTG-TTGGTGGGCGGGTTTCATGAGAGGTGCTGTGTCTATTGCGTTGEST: gi|71301742|gb|DR786939.1|DR786939
genomic: AAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtcttt ... ggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
EST: CAAATTTGACCNNNNNNNCTCCAAATGGAAAGATATCTTTTAGGCAGCAG GTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTGEST: gi|76931825|gb|DV172864.1|DV172864
genomic: CAAATTTGACCAAAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtcttt ... ggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
EST: CAAATTTGACCNNNNNNNCTCCAAATGGAAAGATATCTTTTAGGCAGCAG GTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTGEST: gi|76921050|gb|DV168432.1|DV168432
genomic: CAAATTTGACCAAAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtcttt ... ggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
EST: CAAATTTGACCNNNNNNNCTCCAAATGGAAAGATATCTTTTAGGCAGCAG GTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTGEST: gi|87152007|gb|DY396796.1|DY396796
genomic: CAAATTTGACCAAAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtcttt ... ggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
EST: CAAATTTGACCNNNNNNNCTCCAAATGGAAAGATATCTTTTAGGCAGCAG GTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTGEST: gi|20300776|gb|BQ163719.1|BQ163719
genomic: CAAATTTGACCAAAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtcttt ... ggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
EST: CAAATTTGACCNNNNNNNCTCCAAATGGAAAGATATCTTTTAGGCAGCAG GTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTGEST: gi|18964390|gb|BM660978.1|BM660978
genomic: CAAATTTGACCAAAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtcttt ... ggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
EST: CAAATTTGACCNNNNNNNCTCCAAATGGAAAGATATCTTTTAGGCAGCAG GTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTGEST: gi|78119305|gb|DV537689.1|DV537689
genomic: CAAATTTGACCAAAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtcttt ... ggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
EST: CAAATTTGACCNNNNNNNCTCCAAATGGAAAGATATCTTTTAGGCAGCAG GTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
genomic: CAAATTTGACCAAAAAAACTCCAAATGGAAAGATATCTTTTAGGCAGCAGgtaagtcttt ... ggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTG
tcttatgttctcttgaaacagttgttatgttccttacatgatattggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTGGCTTACAATAAG
tccttac putative branch site (score: 129)
atgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctttaacttagcaacatcttaacttcttatgttctcttgaaacagttgttatgttccttacatgatattggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTGGCTTACAATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG