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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccatttagtttctacaaacttatgctgtaaggtttatttctatttgatgtgacatgttatgtatagttgactatcattctttactttgtgacactaccagCTTCACATTTTGGTGGGAACAATGATATTCTCATAGATGGATTTGTCCCTCCTTTAACCAGTGTTGCTCCAATGTTTCCCTTCTTTGAAAACACTGCTGA

Basic information

species Zea mays
transcript GRMZM2G036050_T03
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036050_T03 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os09g39590.1 (Oryza sativa), 3'ss of exon 10
ccatttagtttctacaaacttatgctgtaaggtttatttctatttgatgtgacatgttatgtatagttgactatcattctttactttgtgacactaccagC---TTCACATTTTGGTGGGAACAATGATATTCTCATAGATGGATTTGTCCCTCCTTTAACCAGTGTTGCTCCAATGTTTCCCTTCTTTGAAAACACTGCTGA
       || |    |  ||     ||||||   | || | || |||||  | || |||| | | ||| || | | |||||  || ||||   | | ||||   |||| | ||||| |||||    ||||||||||| ||||||||||||||||| | | | |||||||||||||||||||| ||||||||||| ||| |   
-------gtatagctaggctgcgtttgtaagacct-ttacgatctgatgcaatatattatatgtggttaacaacccttcttggctctgtggttccatcagCTGGTTCAAAGTTTGGCGGGAATGTGGATATTCTCATTGATGGATTTGTCCCTCCATCATCAAGTGTTGCTCCAATGTTTCCTTTCTTTGAAAATACTTC---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348741|gb|DN215714.1|DN215714
EST:     TTCTGAGCCAATGGTCATTGATGCAAGCTCATCTCGAAAATCTGTCAATG                         CTTCACATTTTGGTGGGAACAATGATATTCTCATAGATGGATTTGTCCCTC
genomic: TTCTGAGCCAATGGTCATTGATGCAAGCTCATCTCGAAAATCTGTGAATGgtataacacg ... acactaccagCTTCACATTTTGGTGGGAACAATGATATTCTCATAGATGGATTTGTCCCTC
EST: gi|5847327|gb|AW000406.1|AW000406
EST:     TTCTGAGCCAATGGTCATTGATGCAAGCTCATCTCGAAAATCTGTGAATG                         CTTCACATTTTGGTGGGAACAATGATATTCTCATAGATGGATTTGTCCCTC
genomic: TTCTGAGCCAATGGTCATTGATGCAAGCTCATCTCGAAAATCTGTGAATGgtataacacg ... acactaccagCTTCACATTTTGGTGGGAACAATGATATTCTCATAGATGGATTTGTCCCTC
EST: gi|211178129|gb|FL062330.1|FL062330
EST:     TGCAAGCTCATCTCGAAAATCTGTGAATG                         CTTCACATTTTGGTGGGAACAATGATATTCTCATAGATGGATTTGTCCCTC
genomic: TGCAAGCTCATCTCGAAAATCTGTGAATGgtataacacg ... acactaccagCTTCACATTTTGGTGGGAACAATGATATTCTCATAGATGGATTTGTCCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgtgacatgttatgtatagttgactatcattctttactttgtgacactaccagCTTCACATTTTGGTGGGAACAATGATATTCTCATAGATGGATTTGTCCCTCCTTTAACCAGTGTTGCTCCAATGTTTCCCTTCTTTGAAAACACTGCTGA
                   agttgac  putative branch site (score: 4)
           ttatgtata  TA-rich tract