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gtctgctctaatccattcacattccagcactatattatttatgtcacatattcattgtttgttttgtttctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
species | Zea mays |
transcript | GRMZM2G035338_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGACATCGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCG GAAAAGAGCCAGATGTAGCAGCATGGAGGEST: gi|60350250|gb|DN217223.1|DN217223
genomic: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCGgtctgctcta ... ctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
EST: TGACATCGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCG GAAAAGAGCCAGATGTAGCAGCATGGAGGEST: gi|211338441|gb|FL481251.1|FL481251
genomic: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCGgtctgctcta ... ctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
EST: TGACATCGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCG GAAAAGAGCCAGATGTAGCAGCATGGAGGEST: gi|78179609|gb|DV549982.1|DV549982
genomic: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCGgtctgctcta ... ctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
EST: TGACATCGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCG GAAAAGAGCCAGATGTAGCAGCATGGAGGEST: gi|211102107|gb|FL031912.1|FL031912
genomic: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCGgtctgctcta ... ctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
EST: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCG GAAAAGAGCCAGATGTAGCAGCATGGAGGEST: gi|211102106|gb|FL031911.1|FL031911
genomic: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCGgtctgctcta ... ctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
EST: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCG GAAAAGAGCCAGATGTAGCAGCATGGAGGEST: gi|88751321|gb|DY535462.1|DY535462
genomic: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCGgtctgctcta ... ctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
EST: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCG GAAAAGAGCCAGATGTAGCAGCATGGAGGEST: gi|6952677|gb|AW424745.1|AW424745
genomic: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCGgtctgctcta ... ctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
EST: TGACATCGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCG GAAAAGAGCCAGATGTAGCAGCATGGAGGEST: gi|211363966|gb|FK958195.1|FK958195
genomic: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCGgtctgctcta ... ctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
EST: TGCTCAAGAGACATATTGCAACCG GAAAAGAGCCAGATGTAGCAGCATGGAGGEST: gi|211532388|gb|FL468965.1|FL468965
genomic: TGCTCAAGAGACATATTGCAACCGgtctgctcta ... ctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
EST: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCG GAAAAGAGCCAGATGTAGCAGCATGGAGGEST: gi|89249957|gb|DY621743.1|DY621743
genomic: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCGgtctgctcta ... ctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
EST: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCG GAAAAGAGCCAGATGTAGCAGCATGGAGGEST: gi|24765829|gb|CA400988.1|CA400988
genomic: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCGgtctgctcta ... ctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
EST: TGCCATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCACCCG GAAAAGAGCCAGATGTAGCAGCATGGAGGEST: gi|149082265|gb|EE171450.2|EE171450
genomic: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCGgtctgctcta ... ctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
EST: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCG GAAAAGAGCCAGATGTAGCAGCATGGAGGEST: gi|78079145|gb|DV507557.1|DV507557
genomic: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCGgtctgctcta ... ctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
EST: AGAGTGTTCAAGAGACATATTGCAACCG GAAAAGAGCCAGATGTAGCAGCATGGAGGEST: gi|94472538|gb|EB701496.1|EB701496
genomic: AGAGTGCTCAAGAGACATATTGCAACCGgtctgctcta ... ctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
EST: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCG GAAAAGAGCCAGATGTAGCAGCATGGAGGEST: gi|71766668|gb|DR964605.1|DR964605
genomic: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCGgtctgctcta ... ctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
EST: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCG GAAAAGAGCCAGATGTAGCAGCATGGAGGEST: gi|86470370|gb|DY236740.1|DY236740
genomic: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCGgtctgctcta ... ctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
EST: TGCCATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCG GAAAAGAGCCAGATGTAGCAGCATGGAGG
genomic: TGACATTGATATCTCCATGCAAAGAGTGCTCAAGAGACATATTGCAACCGgtctgctcta ... ctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
cagcactatattatttatgtcacatattcattgtttgttttgtttctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
tttgttttgtttctct CT-rich tract
tatattatttatgtca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgctctaatccattcacattccagcactatattatttatgtcacatattcattgtttgttttgtttctcttgtcagGAAAAGAGCCAGATGTAGCAGCATGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG