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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaaagttgtaccttacttcgcatatatactcataaatttctgtgaccgatatgttcaatactttgcagGACTTCTTTAAAAAACGTGGTGTTCCTGTCATGACAGTAACCGATTTGTTTAATTTTGTTATTGATCAAAGCATTTCTGATGAAGGTGTTGATGATTATC

Basic information

species Zea mays
transcript GRMZM2G035098_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G035098_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os07g06820.1 (Oryza sativa), 3'ss of exon 9
gtaagtgaaagttgtaccttacttcgcatatatactcataaatttctgtgaccga-tatgttcaatact--ttgcagGACTTCTTTAAAAAACGTGGTGTTCCTGTCATGACAGTAACCGATTTGTTTAATTTTGTTATTGATCAAAGCATTTCTGATGAAGGTGTTGATGATTATC
|| |||  |||||| |  | ||   ||||| | | || ||  ||    |   | | | |||   || ||  |||||||||||||||||||||||||||||| |||||||| ||||||| ||  | ||||||||||| ||||||||||  ||| ||||||||| ||||||| |||| |
gtgagtagaagttgaat-tgacactgcatagacattcgtaggttgtgatattcaaatgtgtgtgatgctatttgcagGACTTCTTTAAAAAACGTGGTGTTGCTGTCATGTCAGTAACAGAACTATTTAATTTTGTGATTGATCAAAATATTGCTGATGAAGATGTTGATCATTACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttcgcatatatactcataaatttctgtgaccgatatgttcaatactttgcagGACTTCTTTAAAAAACGTGGTGTTCCTGTCATGACAGTAACCGATTTGTTTAATTTTGTTATTGATCAAAGCATTTCTGATGAAGGTGTTGATGATTATC
 accttac  putative branch site (score: 3)
        atatatactcataaat  TA-rich tract