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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtatataaatgtttttgatgagttaccttttatgtgggtttgcatggtatcttaaaactctttgtggaaaatagGTTGTGGAACATGGTCTTGGTCATCTTCCTTTTCAGGAAAAGCAGGTCATCACTCCGACTG

Basic information

species Zea mays
transcript GRMZM2G034143_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034143_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os02g17320.1 (Oryza sativa), 3'ss of exon 9
gtcagtatataaatgtttttgatgagttaccttttatgtgggtttgcatggtatcttaaaactctttgtggaaaatagGTTGTGGAACATGGTCTTGGTCATCTTCCTTTTCAGGAAAAGCAGGTCATCACTCCGACTG
||||||||  |||||   ||||   |||  ||||| | || |||  ||||||| ||| ||  |   ||||||| ||||||||| || |||||||||||||||||||| ||  |||||||||||||||| ||||| ||||
gtcagtatgaaaatgcaattgacatgttttcttttgtatgagttcccatggtagcttgaattttgctgtggaatatagGTTGTTGAGCATGGTCTTGGTCATCTTCCATTCAAGGAAAAGCAGGTCATAACTCCAACTG

upper sequence: GRMZM2G034143_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os11g16370.1 (Oryza sativa), 3'ss of exon 9
gtcagtatataaatgtttttgatgagttaccttttatgtgggtttgcatggtatcttaaaactctttgtggaaaatagGTTGTGGAACATGGTCTTGGTCATCTTCCTTTTCAGGAAAAGCAGGTCATCACTCCGACTG
||||||||  | |||   ||||   |||  ||||| | ||  ||| ||||||| ||| ||  || | |||||| ||||||||| || |||||||||||||||||||| ||  ||||||| |||||||| ||||| ||||
gtcagtatgaacatgcaattgacatgttttcttttgtatgaatttccatggtagcttgaatttcct-gtggaatatagGTTGTCGAGCATGGTCTTGGTCATCTTCCATTCAAGGAAAAACAGGTCATAACTCCAACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148943393|gb|EC888452.2|EC888452
EST:     CCACAGCAACACATGATTTCATATTTTATGCTGATCGGTTGATTCGACTG                         GTTGTGGAACATGGTCTTGGTCATCTTCCTTTTCAGGAAAAGCAGGTCATC
genomic: CCACAGCAACACATGATTTCATATTTTATGCTGATCGGTTGATTCGACTGgtcagtatat ... tggaaaatagGTTGTGGAACATGGTCTTGGTCATCTTCCTTTTCAGGAAAAGCAGGTCATC
EST: gi|60340284|gb|DN207257.1|DN207257
EST:     GTTGATTCGACTG                         GTTGTGGAACATGGTCTTGGTCATCTTCCTTTTCAGGAAAAGCAGGTCATC
genomic: GTTGATTCGACTGgtcagtatat ... tggaaaatagGTTGTGGAACATGGTCTTGGTCATCTTCCTTTTCAGGAAAAGCAGGTCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagttaccttttatgtgggtttgcatggtatcttaaaactctttgtggaaaatagGTTGTGGAACATGGTCTTGGTCATCTTCCTTTTCAGGAAAAGCAGGTCATCACTCCGACTG
                                      ctctttgt  CT-rich tract
                            tatcttaaaa  TA-rich tract