Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatctctttatgcttcttctcgatataaatatggtaccttgcatttcctgaaacgccataccatttcctgaaaggggatcattgggaccggctccatacccccataagagatgccctgattatgctcaacaaatgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGATTGCATCATGGCCGCGTAAATCACAAATGTGGTTGTTCCATTTGAAGTCA

Basic information

species Zea mays
transcript GRMZM2G034083_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034083_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os12g37870.1 (Oryza sativa), 3'ss of exon 10
--------gtatgatctctttatgcttcttctcgatataaatatggtaccttgcatttcctgaaacgccataccatttcctgaaaggggatcattgggaccggctccatacccccataagagatgccc-tgattatgctcaacaaa----------tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGATTGCATCATGGCCG---CGTAAATCACAAATGTGGTTGTTCCATTTGAAGTCA
         ||    ||  |||   |  |  || |   |||  |     |   ||||||||  |      || ||      |  || |  | | |      | |     || ||  |     || ||| |||| ||     || |           || ||||||||| |||||||||||||| || |||||||| ||||||||  |||||||||||||||||||||| |   | ||| ||| | |  |  |||  |  ||   ||   
gtatggacctactggctacttactatgttcttcca-gcaaaccttagctcagccatttcctacactatt-tatcagaattcgtcagagattaactttattagacataggacaccattggaccatccccatgatcataacggacgagctgaattcactgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGATTGCATCATGGCTGAAGCATAATTCAGACAACTATTTGCGCTGTTCCCAG---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16916519|gb|BM072879.1|BM072879
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|67023264|gb|CO452013.1|CO452013
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|40303556|gb|CK347943.1|CK347943
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|32789593|gb|CD941829.1|CD941829
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATC
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATC
EST: gi|28983142|gb|BQ538521.2|BQ538521
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|67024209|gb|CO452958.1|CO452958
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|211020092|gb|FL063965.1|FL063965
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|67013475|gb|CO442224.1|CO442224
EST:     GACTCGCCAAAATGCGCACCTTATGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|161580536|gb|EY957741.1|EY957741
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGG
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGG
EST: gi|211133982|gb|FL063981.1|FL063981
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|60353272|gb|DN220245.1|DN220245
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTTTATGGACCAGAGGCGACCATGACTGGGATTTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|32866830|gb|CF006512.1|CF006512
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|16927003|gb|BM080076.1|BM080076
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|18177201|gb|BM378411.1|BM378411
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|5361093|gb|AI795708.1|AI795708
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|166467816|gb|EG281433.1|EG281433
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCA
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCA
EST: gi|60353107|gb|DN220080.1|DN220080
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|24769705|gb|CA404834.1|CA404834
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGCCCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|211020102|gb|FL063975.1|FL063975
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|32844872|gb|CD984553.1|CD984553
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGCCCAGAGGCGACCATGGCTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|67025367|gb|CO454116.1|CO454116
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|5819356|gb|AI987562.1|AI987562
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|148947868|gb|EC893361.2|EC893361
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTTTATGGACCAGAGGCGACCATGACTGGGATTTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|32845129|gb|CD984810.1|CD984810
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|4217927|gb|AI391923.1|AI391923
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|32844736|gb|CD984417.1|CD984417
EST:     GACTCGCCAAAATGCGCACCCTATGCGCCGAACTTGGCGTTTCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|5740100|gb|AI947790.1|AI947790
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|211020103|gb|FL063976.1|FL063976
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|211020091|gb|FL063964.1|FL063964
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|44901489|gb|CK828034.1|CK828034
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|148986292|gb|EE030027.2|EE030027
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|6101966|gb|AW126436.1|AW126436
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|32844415|gb|CD984096.1|CD984096
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|18177874|gb|BM379084.1|BM379084
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|32798412|gb|CD950648.1|CD950648
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATC
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATC
EST: gi|149008522|gb|EE040695.2|EE040695
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTTTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|18177582|gb|BM378792.1|BM378792
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|24768435|gb|CA403564.1|CA403564
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|78103680|gb|DV522108.1|DV522108
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|13150060|gb|BG320382.1|BG320382
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|87156899|gb|DY401688.1|DY401688
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|37400570|gb|CF637640.1|CF637640
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATTACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|33103007|gb|CF062967.1|CF062967
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|4217775|gb|AI391771.1|AI391771
EST:     CAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: CAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|32844999|gb|CD984680.1|CD984680
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|32919518|gb|CF024330.1|CF024330
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|211133979|gb|FL063978.1|FL063978
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCC
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCC
EST: gi|31354936|gb|CD439293.1|CD439293
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|166614386|gb|EG182877.1|EG182877
EST:     CCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGA
genomic: CCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGA
EST: gi|32866831|gb|CF006513.1|CF006513
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|148951644|gb|EC897388.2|EC897388
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|33100657|gb|CF060617.1|CF060617
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|37387167|gb|CF630776.1|CF630776
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|67030008|gb|CO458757.1|CO458757
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|60339101|gb|DN206074.1|DN206074
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|33942317|gb|CF348917.1|CF348917
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|67042517|gb|CO468772.1|CO468772
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGA-GCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|67022701|gb|CO451450.1|CO451450
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|149000524|gb|EE037707.2|EE037707
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTTTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|60350340|gb|DN217313.1|DN217313
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTTTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|32936205|gb|CF041017.1|CF041017
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|44681881|gb|CK786929.1|CK786929
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|14245199|gb|BG873781.1|BG873781
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|5706332|gb|AI942108.1|AI942108
EST:     GACTCGCCAAAATGCGCCCCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAAAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|7227780|gb|AW566421.1|AW566421
EST:     TAGGCCCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGNCTGGGATCTGCAAAGAAGCCATTGAT
genomic: TAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|6827666|gb|AW331309.1|AW331309
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAAAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|89763369|gb|DY690597.1|DY690597
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTTTATGGACCAGAGGCGACCATGACTGGGATTTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|13381606|gb|BG458386.1|BG458386
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|37401585|gb|CF638160.1|CF638160
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|211219075|gb|FL476018.1|FL476018
EST:     GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
genomic: GACTCGCCAAAATGCGCACCCTAGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGAT
EST: gi|67016541|gb|CO445290.1|CO445290
EST:     ACTCGCCAAAATGCGCACCCTNAG-CGCCGAACTTGGCGTTCCAATTGAG                         GTCTATGGACCANNAG-CGACCATGACTGGGATCTGNCAAA-A-GCCATTG
genomic: ACTCGCCAAAATGCGCACCCT-AGGCGCCGAACTTGGCGTTCCAATTGAGgtatgatctc ... tgcattgcagGTCTATGGACCAG-AGGCGACCATGACTGGGATCTG-CAAAGAAGCCATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggctccatacccccataagagatgccctgattatgctcaacaaatgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGATTGCATCATGGCCGCGTAAATCACAAATGTGGTTGTTCCATTTGAAGTCA
                         ccctgat  putative branch site (score: 4)
                            tgattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgatctctttatgcttcttctcgatataaatatggtaccttgcatttcctgaaacgccataccatttcctgaaaggggatcattgggaccggctccatacccccataagagatgccctgattatgctcaacaaatgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGATTGCATCATGGCCGCGTAAATCACAAATGTGGTTGTTCCATTTGAAGTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG