1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagttcctttgtggttccccttcatgacaataacctaatctttcatgtgatattatctatgaaacatgctttgcatcgagctagttcatagccttcctgaatccaatgattgaaattggcaaatgtgctctggagtagactgatatttaggggaacaattgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCACATGCAGTTCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGC
species | Zea mays |
transcript | GRMZM2G033526_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|6526771|gb|AW216050.1|AW216050
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|21759868|gb|BQ635409.1|BQ635409
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTCCAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|60395622|gb|DN228492.1|DN228492
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|60356976|gb|DN223949.1|DN223949
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|45567965|gb|CK985835.1|CK985835
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|13177888|gb|BG349071.1|BG349071
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|20802326|gb|BQ293376.1|BQ293376
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|31357830|gb|CD442187.1|CD442187
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|60355665|gb|DN222638.1|DN222638
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|76287860|gb|DV027428.1|DV027428
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|60355637|gb|DN222610.1|DN222610
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|116822697|gb|EC866119.1|EC866119
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|60351363|gb|DN218336.1|DN218336
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|37418065|gb|CF646693.1|CF646693
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|33467026|gb|CF244075.1|CF244075
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: ACACTA-TTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|213182699|gb|FM195337.1|FM195337
genomic: ACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|78025170|gb|DV493557.1|DV493557
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|24765370|gb|CA400529.1|CA400529
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|60341691|gb|DN208664.1|DN208664
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|60394678|gb|DN227548.1|DN227548
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|5739696|gb|AI947272.1|AI947272
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCGTTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCAEST: gi|60397119|gb|DN229938.1|DN229938
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|4967114|gb|AI692056.1|AI692056
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|60400092|gb|DN232899.1|DN232899
genomic: CGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|60338482|gb|DN205455.1|DN205455
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|60354896|gb|DN221869.1|DN221869
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCAEST: gi|148929002|gb|EC874192.2|EC874192
genomic: CTCCTGAGCCATTATCGTCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
EST: TCCCTCGTCTCCACTATTTGCATTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
genomic: TCCCTCGTCTACACTATTTGCATTTACAAACGAgtgagttcct ... attgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCA
aaattggcaaatgtgctctggagtagactgatatttaggggaacaattgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCACATGCAGTTCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGC
gactgat putative branch site (score: 685)
tgatattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttcctttgtggttccccttcatgacaataacctaatctttcatgtgatattatctatgaaacatgctttgcatcgagctagttcatagccttcctgaatccaatgattgaaattggcaaatgtgctctggagtagactgatatttaggggaacaattgttgtagGGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGCGTCATCCCTATTCACATGCAGTTCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA