1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgtagtgtttgctattgcaagccgacttctccttcggtccttcccccctctataactagtgggaaagaaacgatggtaacagaccttattctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG
species | Zea mays |
transcript | GRMZM2G032267_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|60342617|gb|DN209590.1|DN209590
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|4314889|gb|AI444686.2|AI444686
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|60351813|gb|DN218786.1|DN218786
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: CAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|4826086|gb|AI667714.1|AI667714
genomic: CAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|32842037|gb|CD981718.1|CD981718
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGEST: gi|21331671|gb|BQ487052.1|BQ487052
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|211496869|gb|FL295227.1|FL295227
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|60358619|gb|DN225592.1|DN225592
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|60347035|gb|DN214008.1|DN214008
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|22819003|gb|BU499093.1|BU499093
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|87157723|gb|DY402512.1|DY402512
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|26559755|gb|CA831990.1|CA831990
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|33096873|gb|CF056833.1|CF056833
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|5670860|gb|AI932123.1|AI932123
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|28983722|gb|BQ538786.2|BQ538786
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: ACAGCAGACATCTTTGAA ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|32840485|gb|CD980166.1|CD980166
genomic: ACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCEST: gi|60356915|gb|DN223888.1|DN223888
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCC
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|4321073|gb|AI467736.1|AI467736
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|67016264|gb|CO445013.1|CO445013
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|148952636|gb|EC898467.2|EC898467
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|32842224|gb|CD981905.1|CD981905
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCEST: gi|7162558|gb|AW520180.1|AW520180
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATC
EST: TTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|7227451|gb|AW566092.1|AW566092
genomic: TTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGEST: gi|71420713|gb|DR805175.1|DR805175
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
EST: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAG ACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
genomic: GAAGAAAGTCTTGCTTATTTAGGCGAGATCGGACAGCAGACATCTTTGAGgttagatttt ... ctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGG
ccctctataactagtgggaaagaaacgatggtaacagaccttattctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG
tggtaac putative branch site (score: 2)
ccttattctctctgc putative PPT
tataacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagtgtttgctattgcaagccgacttctccttcggtccttcccccctctataactagtgggaaagaaacgatggtaacagaccttattctctctgcagACATGCTATTCAGTTGCTATCACCTGCCAGCGTGGTCGCAAAGACCAACGGGAGAGAAAAGATGTGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - -tgtttgc
- - - - - - - -tgcaagc
- - - - - - - - - - - - -cttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa