Sequence
atgc intronic sequence ATGC exonic sequence...ctcttctcttctcttctcttttatctatgaaatgatactcaaatcgttttttgtgttcgagaaaaaaatatgataatgatgggctcatgtaaaatttcagTCAATACCATATCCAATTTTCCCTGGAGGTGCAATTATTGGATGCTCTGCAGGATTTCTAAATGTTCCCAAAATAAAAGGAACCCATACAGCTATGAAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G032222_T03 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os10g37210.1 (Oryza sativa), 3'ss of exon 10
ctcttctcttctcttctcttttatctatgaaatgatactcaaatcgttttttgtgttcgagaaaaaaatatgataatgatgg-gctcatgtaaaatttcagTCAATACCATATCCAATTTTCCCTGGAGGTGCAATTATTGGATGCTCTGCAGGATTTCTAAATGTTCCCAAAATAAAAGGAACCCATACAGCTATGAAAT
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tttacctccgtcattcagtcaggtctcctgtattttgttttctttagttgtta-gcaatagttactgatagggtgctgataatgttcatgtaaaatttcagTCAATACCAAATCCAGTTTTCCCTGGAGGTGCAATTATTGGATGCTCTGCAGGGTTCCTTAATGTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGT
upper sequence: GRMZM2G032222_T03 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA15G03360.1 (Glycine max), 3'ss of exon 10
ctcttctcttctcttctcttttatct-atgaaatgatactca----aatcgttttttgtgttcgagaaaaaaatatgataatgatgggctcatgtaaaatttcagTCAATACCATATCCAATTTTCCCTGGAGGTGCAATTATTGGATGCTCTGCAGGATTTCTAAATGTTCCCAAAATAAAAGGAACCCATACAGCTATGAAAT
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-ttgtttgttatcctattagtcatttgattgcctgttatttgctgcagtgcattattttctactcattacaaatacgaatgtgat----tctagttaaatttcagTCTATCCCATATCCAGTTTTTCCTGGAGGAGCAATTATTGGATGTTCAGCTGGCTTCATGAATGTGCCAAAGATAAAGGGAACTCACACGGCAATGAAAT
upper sequence: GRMZM2G032222_T03 (Zea mays), 3'ss of exon 10
lower sequence: AT2G43400.1 (Arabidopsis thaliana), 3'ss of exon 10
--------ctcttctcttctcttctcttttatctatgaaatgatactcaaatcgttttttgtgttcgagaaaaaaatatgataatgatgggctcatgtaaaatttcagTCAATACCATATCCAATTTTCCCTGGAGGTGCAATTATTGGATGCTCTGCAGGATTTCTAAATGTTCCCAAAATAAAAGGAACCCATACAGCTATGAAAT
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attgagaaataagatttgatctagttaaccctttatgaca-gaaataagatttgtttgacatgtt---atgacatatttgaacttgatg----ctagtaaaatttcagTCCATTCCCTATCCAGTTTTTCCTGGAGGAGCAATAATTGGATGTTCAGCTGGTTTTCTCAATGTACCCAAGATTAAGGGAACACACACTGCAATGAAAT
upper sequence: GRMZM2G032222_T03 (Zea mays), 3'ss of exon 10
lower sequence: Vv05s0102g01110.t01 (Vitis vinifera), 3'ss of exon 10
-----ctcttctcttctcttctcttttatctatgaaatgatactcaaatcgttttttgtgttcgagaaaaaaatatgataatgatgggctcatgtaaaatttcagTCAATACCATATCCAATTTTCCCTGGAGGTGCAATTATTGGATGCTCTGCAGGATTTCTAAATGTTCCCAAAATAAAAGGAACCCATACAGCTATGAAAT
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ttcatgtcttcccaaaatgtttcaagtgttcatatgatt-tgattgtagaattttcagtattttataacaaa-tatgaatatgatg---ctaagttaaatttcagTCTATTCCATATCCAGTTTTCCCAGGTGGAGCAATCATTGGATGCTCAGCTGGCTTCCTAAACGTCCCAAAGATAAAGGGAACACATACTGCAATGAAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttttttgtgttcgagaaaaaaatatgataatgatgggctcatgtaaaatttcagTCAATACCATATCCAATTTTCCCTGGAGGTGCAATTATTGGATGCTCTGCAGGATTTCTAAATGTTCCCAAAATAAAAGGAACCCATACAGCTATGAAAT
agaaaaaaatatgata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctcttctcttctcttctcttttatctatgaaatgatactcaaatcgttttttgtgttcgagaaaaaaatatgataatgatgggctcatgtaaaatttcagTCAATACCATATCCAATTTTCCCTGGAGGTGCAATTATTGGATGCTCTGCAGGATTTCTAAATGTTCCCAAAATAAAAGGAACCCATACAGCTATGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA