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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caatggtgtgtacacaacacttcattatagtgtgacttccatagtagggtacttgtaaaaaaactaatgtatttgatattaaaaattcacatgcttgcagGTTCTAAAATTGTTTTTGCAAATGGATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAAT

Basic information

species Zea mays
transcript GRMZM2G031572_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031572_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os10g36760.1 (Oryza sativa), 3'ss of exon 10
caatggtgtgtacacaacacttcattatagtgtgacttccatagtagggtacttgtaaaaaaactaatgtatttgatattaaaaattc-acatgcttgcagGTTCTAAAATTGTTTTTGCAAATGGATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAAT
 | |  ||||||  ||  |   |||   |     |    |||  |   | |     |  ||  ||  | | |||  || | || || |  ||||| ||||||||| ||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||| | ||||
aagtactgtgtatgcagtatgacatccaaagcctataatcattattctgcaggca-atcaattcttgtattttttttaatcaatatactgcatgcctgcagGTTCGAAAATTGTTTTTGCAAACGGCTCTCAAGATCCATGGCGCCATGCTTCTAAGCAGAAATCATCAAAAGAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211191456|gb|FL473730.1|FL473730
EST:     CCCTGATGTCTTTATGACAAACTTATACTATGGAGGCMCAGGAATTGCAG                         GTTCTAAAATTGTTTTTGCAAATGGATCTCAAGACCCATGGCGCCACGCTT
genomic: CCCTGATGTCTTTATGACAAACTTATACTATGGAGGCACAGGAATTGCAGgtatggcctc ... atgcttgcagGTTCTAAAATTGTTTTTGCAAATGGATCTCAAGACCCATGGCGCCACGCTT
EST: gi|91877512|gb|EB407469.1|EB407469
EST:     CCCTGATGTCTTTATGACAAACTTATACTATGGAGGCACAGGAATTGCAG                         GTTCTAAAATTGTTTTTGCAAATGGATCTCAAGACCCATGGCGCCACGCTT
genomic: CCCTGATGTCTTTATGACAAACTTATACTATGGAGGCACAGGAATTGCAGgtatggcctc ... atgcttgcagGTTCTAAAATTGTTTTTGCAAATGGATCTCAAGACCCATGGCGCCACGCTT
EST: gi|67038480|gb|CO464800.1|CO464800
EST:     CCCTGATGTCTTTATGACAAACTTATACTATGGAGGCACAGGAATTGCAG                         GTTCTAAAATTGTTTTTGCAAATGGATCTCAAGACCCATGGCGCCACGCTT
genomic: CCCTGATGTCTTTATGACAAACTTATACTATGGAGGCACAGGAATTGCAGgtatggcctc ... atgcttgcagGTTCTAAAATTGTTTTTGCAAATGGATCTCAAGACCCATGGCGCCACGCTT
EST: gi|31355151|gb|CD439508.1|CD439508
EST:     CCCTGATGTCTTTATGACAAACTTATACTATGGAGGCACAGGAATTGCAG                         GTTCTAAAATTGTTTTTGCAAATGGATCTCAAGACCCATGGCGCCACGCTT
genomic: CCCTGATGTCTTTATGACAAACTTATACTATGGAGGCACAGGAATTGCAGgtatggcctc ... atgcttgcagGTTCTAAAATTGTTTTTGCAAATGGATCTCAAGACCCATGGCGCCACGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agggtacttgtaaaaaaactaatgtatttgatattaaaaattcacatgcttgcagGTTCTAAAATTGTTTTTGCAAATGGATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAAT
     acttgtaaaaaaacta  TA-rich tract