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gttcttacttcttacatctttttattctatcaacagacaggaaacgagcctctaaactttcttgatgtgataccagattatgaatcctgtgttgtttgtcattttttttgtttcttactagttgcctttttacaaccaatgctagGTTCTGCAATCGGTGGAGCCTATAAAGCATGAAGAGGTAGTCATCGGACAATATGATGGCTACAAGGATGACCCTACTGTGCCAGATGACTCCAACACCC
species | Zea mays |
transcript | GRMZM2G031107_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAAGCCTGTCTCTCTTAAACCCCGAGCACATTAGAGATGAAAAAGTCAAG GTTCTGCAATCGGNGGGAGCCTATAAAGCATGAAGAGGTAGTCATCCGGACEST: gi|18661166|gb|BM501251.1|BM501251
genomic: AAAGCCTGTCTCTCTTAAACCC-GAGCACATTAGAGATGAAAAAGTCAAGgttcttactt ... ccaatgctagGTTCTGCAATCGGTGG-AGCCTATAAAGCATGAAGAGGTAGTCATC-GGAC
EST: AAAAGCCTGTCTCTCTTAAACCCGAGCACATTAGAGATGAAAAAGTCAAG GTTCTGCAATCGGTGGAGCCTATAAAGCATGAAGAGGTAGTCATCGGACAAEST: gi|76281884|gb|DV021452.1|DV021452
genomic: AAAAGCCTGTCTCTCTTAAACCCGAGCACATTAGAGATGAAAAAGTCAAGgttcttactt ... ccaatgctagGTTCTGCAATCGGTGGAGCCTATAAAGCATGAAGAGGTAGTCATCGGACAA
EST: AAAAGCCTGTCTCTCTTAAACCCGAGCACATTAGAGATGAAAAAGTCAAG GTTCTGCAATCGGTGGAGCCTATAAAGCATGAAGAGGTAGTCATCGGACAAEST: gi|20299928|gb|BQ162871.1|BQ162871
genomic: AAAAGCCTGTCTCTCTTAAACCCGAGCACATTAGAGATGAAAAAGTCAAGgttcttactt ... ccaatgctagGTTCTGCAATCGGTGGAGCCTATAAAGCATGAAGAGGTAGTCATCGGACAA
EST: AAAAGCCTGTCTCTCTTAAACCCGAGCACATTAGAGATGAAAAAGTCAAG GTTCTGCAATCGGTGGAGCCTATAAAGCATGAAGAGGTAGTCATCGGACAAEST: gi|78109019|gb|DV527436.1|DV527436
genomic: AAAAGCCTGTCTCTCTTAAACCCGAGCACATTAGAGATGAAAAAGTCAAGgttcttactt ... ccaatgctagGTTCTGCAATCGGTGGAGCCTATAAAGCATGAAGAGGTAGTCATCGGACAA
EST: AAAAGCCTGTCTCTCTTAAACCCGAGCACATTAGAGATGAAAAAGTCAAG GTTCTGCAATCGGTGGAGCCTATAAAGCATGAAGAGGTAGTCATCGGACAA
genomic: AAAAGCCTGTCTCTCTTAAACCCGAGCACATTAGAGATGAAAAAGTCAAGgttcttactt ... ccaatgctagGTTCTGCAATCGGTGGAGCCTATAAAGCATGAAGAGGTAGTCATCGGACAA
gttgtttgtcattttttttgtttcttactagttgcctttttacaaccaatgctagGTTCTGCAATCGGTGGAGCCTATAAAGCATGAAGAGGTAGTCATCGGACAATATGATGGCTACAAGGATGACCCTACTGTGCCAGATGACTCCAACACCC
ttcttac putative branch site (score: 194)
attttttttgtttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttacttcttacatctttttattctatcaacagacaggaaacgagcctctaaactttcttgatgtgataccagattatgaatcctgtgttgtttgtcattttttttgtttcttactagttgcctttttacaaccaatgctagGTTCTGCAATCGGTGGAGCCTATAAAGCATGAAGAGGTAGTCATCGGACAATATGATGGCTACAAGGATGACCCTACTGTGCCAGATGACTCCAACACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG