1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaggctgctggtgttccttgctgctgctaccttcgtatcaaatgtaaaacaaattatgttatattatttgtccttgtctggggggaaatgcagagttaaaagtattttctgctctttctttcagGTTGCAATAGACACAGCTGCACCACTTGAGAATGATTCAGCTGGTGGTGGTTACATTGATCCCATGGACCTTTACGGAGCTTATGGTTCAATGAGATCTT
species | Zea mays |
transcript | GRMZM2G030902_T04 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTGTGGCAGAACGGGTATCTCGTAGAAGCCATGAAATTCTGGGCCATGAG GTTGCAATAGACACAGCTGCACCACTTGAGAATGATTCAGCTGGTGGTGGTEST: gi|32912299|gb|CF017111.1|CF017111
genomic: GTGTGGCAGAACGGGTATCTCGTAGAAGCCATGAAATTCTGGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCTGCACCACTTGAGAATGATTCAGCTGGTGGTGGT
EST: GTGTGGCAGAACGGGTATCTCGTAGAAGCCATGAAATTCTGGGCCATGAG GTTTTATTAGACACAGCTGCACCACTTGAGAATGATTCAGCTGGTGGTGGTEST: gi|87151821|gb|DY396610.1|DY396610
genomic: GTGTGGCAGAACGGGTATCTCGTAGAAGCCATGAAATTCTGGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCTGCACCACTTGAGAATGATTCAGCTGGTGGTGGT
EST: GTGTGGCAGAACGGGTATCTCGTAGAAGCCATGAAATTCTGGGCCATGAG GTTGCAATAGACACAGCTGCACCACTTGAGAATGATTCAGCTGGTGGTGGTEST: gi|19436499|gb|BM952909.1|BM952909
genomic: GTGTGGCAGAACGGGTATCTCGTAGAAGCCATGAAATTCTGGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCTGCACCACTTGAGAATGATTCAGCTGGTGGTGGT
EST: GTGTGGCAGAACGGGTATCTCGTAGAAGCCATGAAATTCTGGGCCATGAG GTTGCAATAGACACAGCTGCACCACTTGAGAATGATTCAGCTGGTGGTGGT
genomic: GTGTGGCAGAACGGGTATCTCGTAGAAGCCATGAAATTCTGGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCTGCACCACTTGAGAATGATTCAGCTGGTGGTGGT
gtccttgtctggggggaaatgcagagttaaaagtattttctgctctttctttcagGTTGCAATAGACACAGCTGCACCACTTGAGAATGATTCAGCTGGTGGTGGTTACATTGATCCCATGGACCTTTACGGAGCTTATGGTTCAATGAGATCTT
tattttctgctctttc CT-rich tract
agttaaaagtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggctgctggtgttccttgctgctgctaccttcgtatcaaatgtaaaacaaattatgttatattatttgtccttgtctggggggaaatgcagagttaaaagtattttctgctctttctttcagGTTGCAATAGACACAGCTGCACCACTTGAGAATGATTCAGCTGGTGGTGGTTACATTGATCCCATGGACCTTTACGGAGCTTATGGTTCAATGAGATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC