Sequence
atgc intronic sequence ATGC exonic sequence...ctaagatcacaagaactgttccaatgtaaatcagatttccccttagtacaagaagaatttgcagttccaataaagtatacgaaattccattctgttgcagACACTGCTGCCCCAGCTAGATCCACTGACAGAGCAGCAAGTGGTCGGCATATGCAGCCTTCAGCAGTCATCACAGCAGGCAGAGGAAGCTCTCTCGCAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G030877_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os12g05680.1 (Oryza sativa), 3'ss of exon 10
--ctaagatcacaagaactgttccaatgtaaatcagatttcccctt---agtacaagaagaatttgcagttccaataaagtatacgaaattcc-attctgttgcagACACTGCTGCCCCAGCTAGATCCACTGACAGAGCAGCAAGTGGTCGGCATATGCAGCCTTCAGCAGTCATCACAGCAGGCAGAGGAAGCTCTCTCGCAGG
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atttgccaaatcaagttttaa-ccatgctaaatctgacctcatcttctaagtacaagtatggttt----ttctaatttcat-tacaaactcttgatgttgatgcagACAGTGGCACCCCAGCTAGACCCTCTGACTGAACAGCAAGTGGTTGGCATCTGCAGCCTTCAGCAATCATCGCAGCAGGCAGAGGAAGCTCTCTCCCAGG
upper sequence: GRMZM2G030877_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os11g05480.1 (Oryza sativa), 3'ss of exon 10
-----ctaagatcacaagaactgttccaatgtaaatcagatttccccttagtacaagaagaatttgcagttccaataaagtatacgaaattccattctgttgcagACACTGCTGCCCCAGCTAGATCCACTGACAGAGCAGCAAGTGGTCGGCATATGCAGCCTTCAGCAGTCATCACAGCAGGCAGAGGAAGCTCTCTCGCAGG
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attcttcaggaagatgaaaccaagctaaaatctgagctcatctttcaagtatacatatacaattctccaatctcactgcatatt-----ttttatgttgatgcagACATTGACACCCCAGCTGGATCCCCTGACTGAGCAGCAAGTGGTTGGTATCTGCAATCTTCAACAGTCATCGCAACAGGCAGAGGAAGCTCTCTCCCAGG
upper sequence: GRMZM2G030877_T01 (Zea mays), 3'ss of exon 10
lower sequence: EFJ18699 (Selaginella moellendorffii), 3'ss of exon 1
ctaagatcacaagaactgttccaatgtaaatcagatttccccttagtacaagaaga-atttgcag---ttccaataaagtatacga-aattccattctgttgcagACACTGCTGCCCCAGCTAGATCCACTGACAGAGCAGCAAGTGGTCGGCATATGCAGCCTTCAGCAGTCATCACAGCAGGCAGAGGAAGCTCTCTCGCAGG
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-----------------gtacttg-gtctttcagtttttttcttagcttgagtcttcgtttccatcgttttccatatactgatcgatggttttgtttgtctccagATATTGATTCCACAGCTCGAGCCTCTCACCGAGCAGCAGCTTTTAGGAATTTGTAACTTACAGCAGTCGTCACAGCAGGCCGAGGACGCTCTCTCGCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|160481432|gb|EY254316.1|EY254316EST: AGCGCTGCTTCCTCTGGATGGGTGGATTCAGGCCCTCCGATCTGCTCAAG ACACTGCTGCCCCAGCTAGATCCACTGACA-AGCCAGCAAGT
genomic: AGCGCTGCTTCCTCTGGATGGGTGGATTCAGGCCCTCCGATCTGCTCAAGgtatggattc ... tctgttgcagACACTGCTGCCCCAGCTAGATCCACTGACAGAGC-AGCAAGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtacaagaagaatttgcagttccaataaagtatacgaaattccattctgttgcagACACTGCTGCCCCAGCTAGATCCACTGACAGAGCAGCAAGTGGTCGGCATATGCAGCCTTCAGCAGTCATCACAGCAGGCAGAGGAAGCTCTCTCGCAGG
ttccattct CT-rich tract
aataaagtata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctaagatcacaagaactgttccaatgtaaatcagatttccccttagtacaagaagaatttgcagttccaataaagtatacgaaattccattctgttgcagACACTGCTGCCCCAGCTAGATCCACTGACAGAGCAGCAAGTGGTCGGCATATGCAGCCTTCAGCAGTCATCACAGCAGGCAGAGGAAGCTCTCTCGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - -atcacaa
- - - - - - - -ctgttcc
- - - - - - - - - - - - - - - - - - - - - - - - -aagaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caataaa