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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgaaaaatccagaaagacggttgatgtcctgtttctttttccttttatttttataaaccaaagaaacaacgaactggctgcccgtgttgctgactgtttccaaccctatctcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAA

Basic information

species Zea mays
transcript GRMZM2G030784_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030784_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os01g05490.2 (Oryza sativa), 3'ss of exon 7
gtaatgaaaaatccagaaagacggttgatgtcctgtttctttttccttttatttttataaaccaaagaaacaacga--actggctgcccgtgttgctgactgtttccaaccctatctcgt-ctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAA----------------------------------------------------
                                    |      |  |   |      || | | |    |||   |  | |  | ||| |  |  |||| |     |  || |   | || ||| ||||||| |||||||||||||||||| | ||||||||||||||||| |||                                                    
-----------------------------------gtaaagaataatacgaacacagtagaacgattgtacagacatgattacccgcctgattcactgaataccgtctccctttctttgttctgtagCCTGAATTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGATCTTCACCCCATTCACCTTCGGCGTGGGAAGATGTCTGAAGAGGATCATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71325325|gb|DR799341.1|DR799341
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCC
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCC
EST: gi|19437215|gb|BM953625.1|BM953625
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCCCCGTGAAGTCCGCTTAA
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAA
EST: gi|71323015|gb|DR798174.1|DR798174
EST:     CAGCACAGTCTGATGTCGATGGGTTTCTGGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATTCA-CGCGGCCACCCGTGAAGTCCG
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCAT-CAACGCGGCCACC-GTGAAGTCCG
EST: gi|67026065|gb|CO454814.1|CO454814
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGGTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTA
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTA
EST: gi|67024324|gb|CO453073.1|CO453073
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAA
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAA
EST: gi|71433477|gb|DR814527.1|DR814527
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGGCACCGTGAAGTCTGCTTAA
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAA
EST: gi|31355717|gb|CD440074.1|CD440074
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATC
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATC
EST: gi|67034586|gb|CO463136.1|CO463136
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGA-G                         CCTGAGTTCATCGACATCATCAACGCGGGCACCCGTGAA
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACC-GTGAA
EST: gi|67016932|gb|CO445681.1|CO445681
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGA-G                         CCTGAGTT-ATCGACA
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACA
EST: gi|38502719|gb|CF972579.1|CF972579
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCCGGCCACCGTGAAGTCC
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGC-GGCCACCGTGAAGTCC
EST: gi|67012349|gb|CO441098.1|CO441098
EST:     AGCACAGCCTGATGTCAATGGTTTTCTTGTCCGG-GGAGCTTCTTTGAAG                         CCTGAGTTCATCTACTTCATCACCGCGGCCCCCGTGAA-TCCGCTTAA
genomic: AGCACAGCCTGATGTCGATGGTTTTCTTGTC-GGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAA
EST: gi|31355497|gb|CD439854.1|CD439854
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAA
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAA
EST: gi|29544034|gb|CB604414.1|CB604414
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCC-CCGTGAAGTCC-CTTA
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTA
EST: gi|67020068|gb|CO448817.1|CO448817
EST:     AGCACAGCCTGATGTCGATGGTTTTNCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAA
genomic: AGCACAGCCTGATGTCGATGGTTTT-CTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAA
EST: gi|31354917|gb|CD439274.1|CD439274
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAA
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAA
EST: gi|67035472|gb|CO464005.1|CO464005
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTA
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTA
EST: gi|31355762|gb|CD440119.1|CD440119
EST:     CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG                         CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAA
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAA
EST: gi|67024408|gb|CO453157.1|CO453157
EST:     AGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTTCTT-GAAG                         CCTGAGTTCATCGACATCATCAACGCGGNCACCGTGAAGTCCGCTT
genomic: AGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTT-CTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaacgaactggctgcccgtgttgctgactgtttccaaccctatctcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAA
                      tgctgac  putative branch site (score: 2)
                                      ccctatctc  putative PPT