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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaagtatattggttcccgtttactcatatgacacttcttgtttctttcttgagctaacattattattcactttggattcaaacagGCATATGCATCTATCTTGTATCTTCATGTACCTGATACTTTCAGAATTATCCTGCGGGGATGTGATGTGGAACCACATAATGTAGTTAATGATTTGATGT

Basic information

species Zea mays
transcript GRMZM2G030596_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030596_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os01g36840.2 (Oryza sativa), 3'ss of exon 10
gttaagtatattggttcccgtttactcatatg-----acacttcttgtttctttcttgagctaacattattattcac-------tttggattcaaacagGCATATGCATCTATCTTGTATCTTCATGTACCTGATACTTTCAGAATTATCCTGCGGGGATGTGATGTGGAACCACATAATGTAGTTAATGATTTGATGT
|||||||||  || | ||| ||||||  | ||     |    | ||  |  ||  ||| ||| | ||  |||||          | || |||  ||||||||||  ||||| ||||||| |||||  | ||||||| |||||||||  || |||| |||  |||||||||| ||||||||||| | |||||||||||||
gttaagtat--tgatccccatttactagtttgctaaaatcagttttactatttcattgtgctgatatgtttatttttgtttctatctgaatttgaacagGCATACACATCTGTCTTGTACCTTCACATTCCTGATAATTTCAGAATAGTCTTGCGTGGACATGATGTGGAATCACATAATGTAATAAATGATTTGATGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31359814|gb|CD444171.1|CD444171
EST:     AGGTTGCTGCACAGAACTACGTCTCAACTCGGCTTCGCTATTCTCTTAGA                         GCATATGCATCTATCTTGTATCTTCATGTACCTGATACTTTCAGAATTATC
genomic: AGATTGCTGCACAGAACTACGTCTCAACTCGGCTTCGCTATTCTCTTAGAgttaagtata ... attcaaacagGCATATGCATCTATCTTGTATCTTCATGTACCTGATACTTTCAGAATTATC
EST: gi|211528376|gb|FL093832.1|FL093832
EST:     AGATTGCTGCACAGAACTACGTCTCAACTCGGCTTCGCTATTCTCTTAGA                         GGCATATGCATCTATCTTGTATCTTCATGTACCTGATACTTTCAGAATTAT
genomic: AGATTGCTGCACAGAACTACGTCTCAACTCGGCTTCGCTATTCTCTTAGAgttaagtata ... attcaaacagG-CATATGCATCTATCTTGTATCTTCATGTACCTGATACTTTCAGAATTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacttcttgtttctttcttgagctaacattattattcactttggattcaaacagGCATATGCATCTATCTTGTATCTTCATGTACCTGATACTTTCAGAATTATCCTGCGGGGATGTGATGTGGAACCACATAATGTAGTTAATGATTTGATGT
                     agctaac  putative branch site (score: 2)
                        taacattattattca  TA-rich tract