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...gcttcatagtgcatttctccatcgacttgtctgaaccatttttgcatttttgatttgaccaagtttgcaaccatgacacatttttggggcttctttgcagGTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATAGTCACCATCTGCGTCACCATTGTGGGTACTTATTTCTTGCTGAACGCCG
species | Zea mays |
transcript | GRMZM2G026231_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAG GTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATAEST: gi|76289399|gb|DV028967.1|DV028967
genomic: TCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAGgtaaacgagc ... ttctttgcagGTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATA
EST: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAG GTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATAEST: gi|21759969|gb|BQ635510.1|BQ635510
genomic: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAGgtaaacgagc ... ttctttgcagGTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATA
EST: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAG GTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATAEST: gi|50331623|gb|CO526749.1|CO526749
genomic: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAGgtaaacgagc ... ttctttgcagGTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATA
EST: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAG GTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATAEST: gi|101393232|gb|EB818547.1|EB818547
genomic: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAGgtaaacgagc ... ttctttgcagGTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATA
EST: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAG GTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATAEST: gi|24769453|gb|CA404582.1|CA404582
genomic: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAGgtaaacgagc ... ttctttgcagGTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATA
EST: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAG GTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATAEST: gi|6501113|gb|AW202486.1|AW202486
genomic: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAGgtaaacgagc ... ttctttgcagGTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATA
EST: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAG GTGTATTATGTCTACGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATAEST: gi|76019163|gb|DT946333.1|DT946333
genomic: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAGgtaaacgagc ... ttctttgcagGTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATA
EST: ATCATTCTGGAACTATAAG GTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATAEST: gi|76019164|gb|DT946334.1|DT946334
genomic: ATCATTCTGGAACTATAAGgtaaacgagc ... ttctttgcagGTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATA
EST: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAG GTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATAEST: gi|76289400|gb|DV028968.1|DV028968
genomic: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAGgtaaacgagc ... ttctttgcagGTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATA
EST: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAG GTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATAEST: gi|31356756|gb|CD441113.1|CD441113
genomic: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAGgtaaacgagc ... ttctttgcagGTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATA
EST: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAG GTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATAEST: gi|24765154|gb|CA400314.1|CA400314
genomic: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAGgtaaacgagc ... ttctttgcagGTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATA
EST: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAG GTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATA
genomic: GTATCTTCATTGAGATGTACTTCGTGTTCACATCATTCTGGAACTATAAGgtaaacgagc ... ttctttgcagGTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATA
atttttgatttgaccaagtttgcaaccatgacacatttttggggcttctttgcagGTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATAGTCACCATCTGCGTCACCATTGTGGGTACTTATTTCTTGCTGAACGCCG
atttgac putative branch site (score: 628)
cttctttgc putative PPT
acattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttcatagtgcatttctccatcgacttgtctgaaccatttttgcatttttgatttgaccaagtttgcaaccatgacacatttttggggcttctttgcagGTGTATTATGTCTATGGTTTCATGTTGCTGGTCTTCGTCATCCTTCTAATAGTCACCATCTGCGTCACCATTGTGGGTACTTATTTCTTGCTGAACGCCG
gcttcat
- - - - gtgcatt
- - - - - - - - ctccatc
- - - - - - - - - - - - - - - ctgaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgac