1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttttgcttctcatagttttactttgcaagtttaacctggcattttttttcagcaagtttttttactgccctcattctttttttttacaatgatgtggcagGAACTTGATCATGTCGTTGAAGAGCTTAAAAAATTTGCAGTTGTTCATCTGCTGCAACGTAGATCGATCATCTCACTGATAGGGAATGTACAGCGATCGT
species | Zea mays |
transcript | GRMZM2G024686_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CGTTGACTCTAGATCCATCAAAACTATGGAGTCGTGAATTGATCCAGCAG GAACTTGATCATGTCGTTGAAGAGCTTAAAAAATTTGCAGTTGTTCATCTGEST: gi|160481349|gb|EY254273.1|EY254273
genomic: CGTTGACTCTAGATCCATCAAAACTATGGAGTCGTGAATTGATCCAGCAGgtaagcatct ... gatgtggcagGAACTTGATCATGTCGTTGAAGAGCTTAAAAAATTTGCAGTTGTTCATCTG
EST: CGTTGACTCTAGATCCATCAAAACTATGGAGTCGTGAATTGATCCAGCAG GAACTTGATCATGTCGTTGAAGAGCTTAAAAAATTTGCAGTTGTTCATCTGEST: gi|93016257|gb|EB641777.1|EB641777
genomic: CGTTGACTCTAGATCCATCAAAACTATGGAGTCGTGAATTGATCCAGCAGgtaagcatct ... gatgtggcagGAACTTGATCATGTCGTTGAAGAGCTTAAAAAATTTGCAGTTGTTCATCTG
EST: CGTTGACTCTAGATCCATCAAAACTATGGAGTCGTGAATTGATCCAGCAG GAACTTGATCATGTCGTTGAAGAGCTTAAAAAATATGCAGTTGTTCATCTGEST: gi|211498958|gb|FL033696.1|FL033696
genomic: CGTTGACTCTAGATCCATCAAAACTATGGAGTCGTGAATTGATCCAGCAGgtaagcatct ... gatgtggcagGAACTTGATCATGTCGTTGAAGAGCTTAAAAAATTTGCAGTTGTTCATCTG
EST: CGTTGACTCTAGATCCATCAAAACTATGGAGTCGTGAATTGATCCAGCAG GAACTTGATCATGTCGTTGAAGAGCTTAAAAAATTTGCAGTTGTTCATCTGEST: gi|149000753|gb|EE037973.2|EE037973
genomic: CGTTGACTCTAGATCCATCAAAACTATGGAGTCGTGAATTGATCCAGCAGgtaagcatct ... gatgtggcagGAACTTGATCATGTCGTTGAAGAGCTTAAAAAATTTGCAGTTGTTCATCTG
EST: CGTTGACTCTAGATCCATCAAAACTATGGAGTCGTGAATTGATCCAGCAG GAACTTGATCATGTCGTTGAAGAGCTTAAAAAATTTGCAGTTGTTCATCTGEST: gi|32802209|gb|CD954445.1|CD954445
genomic: CGTTGACTCTAGATCCATCAAAACTATGGAGTCGTGAATTGATCCAGCAGgtaagcatct ... gatgtggcagGAACTTGATCATGTCGTTGAAGAGCTTAAAAAATTTGCAGTTGTTCATCTG
EST: GATCCATCAAAACTATGGAGTCGTGAATTGATCCAGCAG GAACTTGATCATGTCGTTGAAGGGCTTAEST: gi|32789045|gb|CD941281.1|CD941281
genomic: GATCCATCAAAACTATGGAGTCGTGAATTGATCCAGCAGgtaagcatct ... gatgtggcagGAACTTGATCATGTCGTTGAAGAGCTTA
EST: GATCCATCAAAACTATGGAGTCGTGAATTGATCCAGCAG GAACTTGATCATGTCGTTGAAGAGCTTA
genomic: GATCCATCAAAACTATGGAGTCGTGAATTGATCCAGCAGgtaagcatct ... gatgtggcagGAACTTGATCATGTCGTTGAAGAGCTTA
ttttcagcaagtttttttactgccctcattctttttttttacaatgatgtggcagGAACTTGATCATGTCGTTGAAGAGCTTAAAAAATTTGCAGTTGTTCATCTGCTGCAACGTAGATCGATCATCTCACTGATAGGGAATGTACAGCGATCGT
attctttttttttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgcttctcatagttttactttgcaagtttaacctggcattttttttcagcaagtttttttactgccctcattctttttttttacaatgatgtggcagGAACTTGATCATGTCGTTGAAGAGCTTAAAAAATTTGCAGTTGTTCATCTGCTGCAACGTAGATCGATCATCTCACTGATAGGGAATGTACAGCGATCGT
- -tgcttct
- - - - - - - - - - ctttgca
- - - - - - - - - - - - - - - - - - - - - - - -ttcagca